BtaALTD0018119-1/3 @ bosTau6
Alternative 5'ss
Gene
ENSBTAG00000017830 | RBMS2
Description
Bos taurus RNA binding motif, single stranded interacting protein 2 (RBMS2), mRNA. [Source:RefSeq mRNA;Acc:NM_001034365]
Coordinates
chr5:57182769-57183758:-
Coord C1 exon
chr5:57183700-57183758
Coord A exon
NA
Coord C2 exon
chr5:57182769-57182860
Length
0 bp
Sequences
Splice sites
5' ss Seq
AAGGTGAGA
5' ss Score
8.68
3' ss Seq
ACTCTGTTTCCCTGTTCCAGGCT
3' ss Score
10.35
Exon sequences
Seq C1 exon
ATACGGCAAGATTGTCTCCACTAAGGCCATCCTGGACAAGACCACAAACAAGTGCAAAG
Seq A exon
NA
Seq C2 exon
GCTATGGCTTTGTGGACTTCGACAGTCCTTCAGCAGCACAGAAAGCAGTTACAGCACTGAAGGCCAGTGGTGTACAAGCGCAGATGGCAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000017830-11-7,12-7,13-7-1/3
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.290
Domain overlap (PFAM):
C1:
PF062597=Abhydrolase_8=FE(18.2=100),PF0007617=RRM_1=FE(29.9=100)
A:
NA
C2:
PF062597=Abhydrolase_8=FE(27.3=100),PF0007617=RRM_1=PD(38.8=83.9)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Mouse
(mm10)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTCCACTAAGGCCATCCTGGA
R:
TTTGCCATCTGCGCTTGTACA
Band lengths:
135-176
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development