MmuALTD0011670-1/3 @ mm9
Alternative 5'ss
Gene
ENSMUSG00000040043 | Rbms2
Description
RNA binding motif, single stranded interacting protein 2 [Source:MGI Symbol;Acc:MGI:1861776]
Coordinates
chr10:127582729-127583716:-
Coord C1 exon
chr10:127583658-127583716
Coord A exon
NA
Coord C2 exon
chr10:127582729-127582820
Length
0 bp
Sequences
Splice sites
5' ss Seq
AAGGTGAGA
5' ss Score
8.68
3' ss Seq
TGACGCTGTTTCCCTTCCAGGCT
3' ss Score
11.3
Exon sequences
Seq C1 exon
GTATGGCAAGATTGTCTCCACTAAGGCCATCCTGGACAAGACCACAAACAAGTGCAAAG
Seq A exon
NA
Seq C2 exon
GCTATGGCTTTGTGGACTTCGACAGTCCGTCATCAGCACAGAAAGCTGTAACTGCACTGAAAGCCAGTGGTGTGCAGGCACAAATGGCAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000040043-7-9,8-9,9-9-1/3
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.323
Domain overlap (PFAM):
C1:
PF0007617=RRM_1=FE(29.9=100)
A:
NA
C2:
PF0007617=RRM_1=PD(38.8=83.9)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGCAAGATTGTCTCCACTAAGG
R:
CTTTGCCATTTGTGCCTGCAC
Band lengths:
148-387
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: