BtaALTD0018689-2/2 @ bosTau6
Alternative 5'ss
Gene
ENSBTAG00000003205 | RPL35
Description
Bos taurus ribosomal protein L35 (RPL35), mRNA. [Source:RefSeq mRNA;Acc:NM_001034495]
Coordinates
chr11:95850116-95854278:-
Coord C1 exon
chr11:95854148-95854278
Coord A exon
chr11:95854011-95854147
Coord C2 exon
chr11:95850116-95850782
Length
137 bp
Sequences
Splice sites
5' ss Seq
TAGGTGCCT
5' ss Score
1.26
3' ss Seq
CCTTGCTTCCCCTCACCCAGGGC
3' ss Score
8.11
Exon sequences
Seq C1 exon
ATTAAGGCTCGAGACCTTCGCGGCAAGAAGAAGGAGGAGCTGCTGAAACAGCTGGAGGACCTGAAGGTGGAGCTGTCCCAGCTGCGCGTGGCTAAAGTGACAGGCGGCGCGGCTTCCAAACTCTCCAAGAT
Seq A exon
GTAAGTGAACTGGCGGCCAGAGTACGGGGACACACGTAGGGGACTTTCGAAGTGGGCTTAAGGAGTTGGCCGTTTAACTGCCCTTTCCATGGCTCCGTGGGTCAGAACGTGGCGCCGTTTCTATTCAGCCTCTTTAG
Seq C2 exon
GGCAAGAAGTACAAGCCCCTGGATCTGCGGCCCAAGAAAACACGTGCCATGCGCCGCCGACTCAACAAGCATGAAGAGAACCTGAAGACCAAGAAGCAGCAGCGGAAGGAGCGGCTGTACCCCCTCCGGAAGTACGCAGTCAAGGCTTGAGCATCCAGCTGTCAATAAAACAGACAGACCACTGGCTGGCATTGCTTTGTGTTTATAGGGGCTTCAGTTGTTGGGGAAGTGGCTATGGTTACCAGGTGCCCGATGGATTCCAGCAGGCTTGCTGCCCTGGCCATAGAGATCTGTTGGGTGCTCTATTATGGTTACTTTGGGCCTGTGCCCCCTGGGCATGGAGAGGCAGGGGTGGAAGGTGTGAGAGCTGTAGATGGTGATGTTCGGTTTGAGCAAGTCAAGGTGATCTGTGGTGGACTTGACATTTTGTCTAATCAACAGCTCCAGACACTAAGAGTTTCCCGTCTGGCATAAAGGCACAGGCATGGGCCACGTTCAGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000003205-4-10,5-10-2/2
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
ORF disruption when splice site is used (sequence inclusion)
No structure available
Features
Disorder rate (Iupred):
C1=0.087 A=NA C2=0.673
Domain overlap (PFAM):
C1:
PF0083118=Ribosomal_L29=PU(69.5=89.1)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGAAACAGCTGGAGGACCTGA
R:
TGGATGCTCAAGCCTTGACTG
Band lengths:
245-382
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development