BtaALTD0018689-1/2 @ bosTau6
Alternative 5'ss
Gene
ENSBTAG00000003205 | RPL35
Description
Bos taurus ribosomal protein L35 (RPL35), mRNA. [Source:RefSeq mRNA;Acc:NM_001034495]
Coordinates
chr11:95850116-95854278:-
Coord C1 exon
chr11:95854148-95854278
Coord A exon
NA
Coord C2 exon
chr11:95850116-95850782
Length
0 bp
Sequences
Splice sites
5' ss Seq
GATGTAAGT
5' ss Score
9.11
3' ss Seq
CCTTGCTTCCCCTCACCCAGGGC
3' ss Score
8.11
Exon sequences
Seq C1 exon
ATTAAGGCTCGAGACCTTCGCGGCAAGAAGAAGGAGGAGCTGCTGAAACAGCTGGAGGACCTGAAGGTGGAGCTGTCCCAGCTGCGCGTGGCTAAAGTGACAGGCGGCGCGGCTTCCAAACTCTCCAAGAT
Seq A exon
NA
Seq C2 exon
GGCAAGAAGTACAAGCCCCTGGATCTGCGGCCCAAGAAAACACGTGCCATGCGCCGCCGACTCAACAAGCATGAAGAGAACCTGAAGACCAAGAAGCAGCAGCGGAAGGAGCGGCTGTACCCCCTCCGGAAGTACGCAGTCAAGGCTTGAGCATCCAGCTGTCAATAAAACAGACAGACCACTGGCTGGCATTGCTTTGTGTTTATAGGGGCTTCAGTTGTTGGGGAAGTGGCTATGGTTACCAGGTGCCCGATGGATTCCAGCAGGCTTGCTGCCCTGGCCATAGAGATCTGTTGGGTGCTCTATTATGGTTACTTTGGGCCTGTGCCCCCTGGGCATGGAGAGGCAGGGGTGGAAGGTGTGAGAGCTGTAGATGGTGATGTTCGGTTTGAGCAAGTCAAGGTGATCTGTGGTGGACTTGACATTTTGTCTAATCAACAGCTCCAGACACTAAGAGTTTCCCGTCTGGCATAAAGGCACAGGCATGGGCCACGTTCAGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000003205-4-10,5-10-1/2
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.087 A=NA C2=0.673
Domain overlap (PFAM):
C1:
PF0083118=Ribosomal_L29=PU(69.5=89.1)
A:
NA
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm10)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGAAACAGCTGGAGGACCTGA
R:
TGGATGCTCAAGCCTTGACTG
Band lengths:
245-382
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development