HsaALTD0005537-1/4 @ hg38
Alternative 5'ss
Gene
ENSG00000136942 | RPL35
Description
ribosomal protein L35 [Source:HGNC Symbol;Acc:HGNC:10344]
Coordinates
chr9:124860183-124861555:-
Coord C1 exon
chr9:124861419-124861555
Coord A exon
NA
Coord C2 exon
chr9:124860183-124860264
Length
0 bp
Sequences
Splice sites
5' ss Seq
GATGTAAGT
5' ss Score
9.11
3' ss Seq
CTGACATCTCTGTTTTGTAGCCG
3' ss Score
7.7
Exon sequences
Seq C1 exon
GCCAAGATCAAGGCTCGAGATCTTCGCGGGAAGAAGAAGGAGGAGCTGCTGAAACAGCTGGACGACCTGAAGGTGGAGCTGTCCCAGCTGCGCGTCGCCAAAGTGACAGGCGGTGCGGCCTCCAAGCTCTCTAAGAT
Seq A exon
NA
Seq C2 exon
CCGAGTCGTCCGGAAATCCATTGCCCGTGTTCTCACAGTTATTAACCAGACTCAGAAAGAAAACCTCAGGAAATTCTACAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000136942-5-2,6-2,7-2,8-2-1/4
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.038 A=NA C2=0.009
Domain overlap (PFAM):
C1:
PF0083118=Ribosomal_L29=PU(69.5=89.1)
A:
NA
C2:
PF0083118=Ribosomal_L29=PD(28.8=60.7)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCAAGATCAAGGCTCGAGATCT
R:
CTTGTAGAATTTCCTGAGGTTTTCT
Band lengths:
218-321
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains