DreALTD0016005-3/4 @ danRer10
Alternative 5'ss
Gene
ENSDARG00000018334 | rpl35
Description
ribosomal protein L35 [Source:ZFIN;Acc:ZDB-GENE-020419-2]
Coordinates
chr21:5768827-5772974:-
Coord C1 exon
chr21:5772909-5772974
Coord A exon
chr21:5772844-5772908
Coord C2 exon
chr21:5768827-5768908
Length
65 bp
Sequences
Splice sites
5' ss Seq
AATGTGAGT
5' ss Score
7.8
3' ss Seq
CATTTGTGTTCTCTTTTTAGCCG
3' ss Score
9.19
Exon sequences
Seq C1 exon
ATCAAGGCCAGAGACCTTCGCGGAAAGAAAAAGGAGGAGCTGCTGAAACAGCTGGATGATCTGAAG
Seq A exon
GTGGAACTTTCCCAGCTCCGCGTTGCCAAGGTTACCGGTGGAGCTGCTTCCAAGCTCTCAAAAAT
Seq C2 exon
CCGTGTTGTCCGCAAGTCCATCGCCAGAGTCCTCACAGTCATCAACCAGACACAGAAGGAGAACTTGAGGAAGTTTTACAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000018334-7-5,8-5,9-5,10-5-3/4
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.087 A=NA C2=0.036
Domain overlap (PFAM):
C1:
PF0083118=Ribosomal_L29=PU(69.5=89.1)
A:
NA
C2:
PF0083118=Ribosomal_L29=PD(28.8=60.7)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATCAAGGCCAGAGACCTTCGC
R:
TCCTCAAGTTCTCCTTCTGTGTCT
Band lengths:
137-202
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]