GgaALTD1019952-2/2 @ galGal4
Alternative 5'ss
Gene
ENSGALG00000001039 | RPL35
Description
60S ribosomal protein L35 [Source:RefSeq peptide;Acc:NP_989604]
Coordinates
chr17:9526346-9526752:-
Coord C1 exon
chr17:9526652-9526752
Coord A exon
chr17:9526617-9526651
Coord C2 exon
chr17:9526346-9526427
Length
35 bp
Sequences
Splice sites
5' ss Seq
AATGTGAGT
5' ss Score
7.8
3' ss Seq
TCTGTTTTCATCCTTCGCAGCCG
3' ss Score
9.8
Exon sequences
Seq C1 exon
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAGGAGCTGCTGAAGCAGCTGGACGACCTCAAGGTGGAGCTGTCACAGCTGCGCGTGGCAAAG
Seq A exon
GTGACGGGCGGGGCCGCCTCCAAGCTGTCCAAAAT
Seq C2 exon
CCGCGTGGTGCGTAAGTCCATTGCCCGAGTCCTGACCGTGATCAACCAGACTCAGAAGGAGAACCTGCGGAAGTTCTACAAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000001039-0-0,1-0-2/2
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.036
Domain overlap (PFAM):
C1:
PF0083118=Ribosomal_L29=PU(64.0=97.0)
A:
NA
C2:
PF0083118=Ribosomal_L29=PD(34.0=60.7)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAAGCAGCTGGACGACCTCAA
R:
CGCAGGTTCTCCTTCTGAGTC
Band lengths:
121-156
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]