HsaALTD0005537-1/2 @ hg19
Alternative 5'ss
Gene
ENSG00000136942 | RPL35
Description
ribosomal protein L35 [Source:HGNC Symbol;Acc:10344]
Coordinates
chr9:127622462-127623828:-
Coord C1 exon
chr9:127623698-127623828
Coord A exon
NA
Coord C2 exon
chr9:127622462-127622543
Length
0 bp
Sequences
Splice sites
5' ss Seq
GATGTAAGT
5' ss Score
9.11
3' ss Seq
CTGACATCTCTGTTTTGTAGCCG
3' ss Score
7.7
Exon sequences
Seq C1 exon
ATCAAGGCTCGAGATCTTCGCGGGAAGAAGAAGGAGGAGCTGCTGAAACAGCTGGACGACCTGAAGGTGGAGCTGTCCCAGCTGCGCGTCGCCAAAGTGACAGGCGGTGCGGCCTCCAAGCTCTCTAAGAT
Seq A exon
NA
Seq C2 exon
CCGAGTCGTCCGGAAATCCATTGCCCGTGTTCTCACAGTTATTAACCAGACTCAGAAAGAAAACCTCAGGAAATTCTACAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000136942-1-4,2-4-1/2
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.065 A=NA C2=0.018
Domain overlap (PFAM):
C1:
PF0083118=Ribosomal_L29=PU(67.8=87.0),PF0038014=Ribosomal_S9=PU(50.0=89.1)
A:
NA
C2:
PF0083118=Ribosomal_L29=PD(28.8=60.7),PF0038014=Ribosomal_S9=FE(32.9=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTCGAGATCTTCGCGGGAAG
R:
CTTGTAGAATTTCCTGAGGTTTTCT
Band lengths:
206-497
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)