BtaALTD0019239-1/2 @ bosTau6
Alternative 5'ss
Gene
ENSBTAG00000011275 | SCUBE1
Description
signal peptide, CUB domain, EGF-like 1 [Source:HGNC Symbol;Acc:HGNC:13441]
Coordinates
chr5:114669590-114671820:-
Coord C1 exon
chr5:114671704-114671820
Coord A exon
NA
Coord C2 exon
chr5:114669590-114669712
Length
0 bp
Sequences
Splice sites
5' ss Seq
GAGGTCTGC
5' ss Score
3.9
3' ss Seq
ACGCCTGCCTGTGCCTCCAGATG
3' ss Score
9.48
Exon sequences
Seq C1 exon
ACATCGACGAGTGCTCCTTTGAGCGGACCTGCGACCACACCTGCATCAACTCCCCGGGCAGCTTCCAGTGTCTCTGCCACCGCGGCTACACACTCTACGGGACCACCCACTGCGGAG
Seq A exon
NA
Seq C2 exon
ATGTGGACGAGTGCAGCATGAACAATGGCAGCTGCGACCAGGGCTGTGTCAACACCAAGGGCGGCTACGAATGCGTCTGCCCCCCGGGGAGGCGCCTGCACTGGAACCGCAAGGACTGCGTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000011275-8-9,9-9-1/2
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0764510=EGF_CA=WD(100=95.0)
A:
NA
C2:
PF146701=FXa_inhibition=WD(100=85.7)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Mouse
(mm10)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GACCACACCTGCATCAACTCC
R:
CTGCCATTGTTCATGCTGCAC
Band lengths:
116-154
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development