BtaALTD0019269-1/2 @ bosTau6
Alternative 5'ss
Gene
ENSBTAG00000001352 | SDCCAG3
Description
Bos taurus serologically defined colon cancer antigen 3 (SDCCAG3), mRNA. [Source:RefSeq mRNA;Acc:NM_001046140]
Coordinates
chr11:103914855-103916296:-
Coord C1 exon
chr11:103916185-103916296
Coord A exon
NA
Coord C2 exon
chr11:103914855-103915490
Length
0 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAGA
5' ss Score
9.22
3' ss Seq
GTGATGGTGTCTCTCTGCAGATT
3' ss Score
10.76
Exon sequences
Seq C1 exon
CTAGACTGTGAGCGCCCCCCAGCCAGGGACCTGGAGTCCCACTTCTTCGGCATTCGGCCGACGTTTATGTGCTATGTGCCCAGTCCGGTGCTAGCTTCCGTGGGAGACACAG
Seq A exon
NA
Seq C2 exon
ATTTTGGCTATGGAAAGGGGAAGTGTGCTAAGCAAGGTCCACCGGGAGCTCAGAACACACACTTTGGAGGTAGAGTAGTTCGGTAATCCTTTGTTTTTCTCTCCACCCGTGTCTCCACGTGCCAGGCACATGCCCAGGGGTGGGGCTGTAGATCTCACAGCGTATAACTAGTATACCTGGAGCCCGGAAGAGCCAGTGGGAGTAGAGCCCCACAGATCTGATCTTCACCGTCAGGTGGAGGGAAGGAGGGCGCAGGGCAGGAGGGAAGTCACGCCTGAGGGGTCTGAAGAGACGGGGGTGGAGCTGAAGTCACAGGAGCCAACTTCACACAGGACTGGCAACTGGGCTGGGCGTCATCGGTGGGCTGAAAGGGCTGCGGTGTGGCTGCCTGGGTCCCCAGGGAGTGGAGAGAGAAGGGAAAGCTGAGGTGAGGCGGGAAGAGGCTGTTCCTGAAGCCTCTGGCTGGGAGGCGGGCCACAGGCGCCTCCGCGCTCCCCACG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000001352-2-2,3-2-1/2
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
NA
No structure available
Features
Disorder rate (Iupred):
C1=0.098 A=NA C2=0.750
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
ENSBTAT00000055628fB6187
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Mouse
(mm10)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACCTGGAGTCCCACTTCTTCG
R:
GCTCTACTCCCACTGGCTCTT
Band lengths:
292-516
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development