HsaALTD0005719-1/2 @ hg19
Alternative 5'ss
Gene
ENSG00000165689 | SDCCAG3
Description
serologically defined colon cancer antigen 3 [Source:HGNC Symbol;Acc:10667]
Coordinates
chr9:139302278-139304587:-
Coord C1 exon
chr9:139304542-139304587
Coord A exon
NA
Coord C2 exon
chr9:139302278-139302390
Length
0 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAGA
5' ss Score
9.22
3' ss Seq
TGTGATGTCTGTTATTTCAGATG
3' ss Score
8.09
Exon sequences
Seq C1 exon
ATGTGCTATGTGCCCAGCCCGGTGCTGGCTTCCGTGGGAGACACAG
Seq A exon
NA
Seq C2 exon
ATGACAGATTTGAAGATCTGGAAGAGGCAAATCCATTCTCTTTTAGAGAGTTTCTGAAGACCAAGAACCTCGGCCTCTCGAAAGAGGATCCGGCCAGCAGAATTTATGCAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000165689-1-5,2-5-1/2
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.246 A=NA C2=0.318
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Other Skipping Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATGTGCTATGTGCCCAGCC
R:
TGCATAAATTCTGCTGGCCGG
Band lengths:
156-372
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)