BtaALTD0019550-2/2 @ bosTau6
Alternative 5'ss
Gene
ENSBTAG00000007329 | SETDB2
Description
SET domain, bifurcated 2 [Source:HGNC Symbol;Acc:HGNC:20263]
Coordinates
chr12:19127530-19133002:+
Coord C1 exon
chr12:19127530-19127752
Coord A exon
chr12:19127753-19128093
Coord C2 exon
chr12:19132886-19133002
Length
341 bp
Sequences
Splice sites
5' ss Seq
CATGTGAGT
5' ss Score
7.83
3' ss Seq
ATACATTGTCTTCCTCCTAGAAC
3' ss Score
7.15
Exon sequences
Seq C1 exon
ATCTACAGAAAACCAGGAAATTCCCCCTATGGAAAATAAAGTTGCAGACTTTAGAGAAAAAGAATCTTCTTTAAATTTATCTTACCAAAAGCATCAGTGCTCTGGCTCCTGTCTGATGAAAATGCCATTTACCTTCAAGGGGGAAAACCCTCTGCAGCTACCAATCAAATGCCATTTCCAAAGACGACACGCGAAGACAAACTCTCATTCTTCAGCACTCCAC
Seq A exon
GTGAGTTATAAAACCCCTTGTGGAAGGAGTCTGCGAAACATGGAGGAAGTTTTTCGTTACCTGCTTGAGACAGAGTGTAACTTTCTATTTACAGATAACTTTTCTTTCAATACCTATGCTCAGTTGACTCGGAATTACCCAAAGGAAGAAGAAATTGTTTCTGATGTGGATATTAGCAATGGCGTGGAATCGGTGCCCATTTCTTTCTGTAATGAAATTGACAATAGAAAACTTCCACAGTTTAAGTACAGAAAGACTATGTGGCCACGAGCATATTATCTAAACAGCTTTTCCAACATGTTTACTGATTCATGTGACTGTTCTGAGGGCTGCATAGACAT
Seq C2 exon
AACAAAATGTGCATGTCTTCAACTGACAGCAAGGAATGCCAAGACTTGCCCCTTGTCAAATAATAAAATAACCACTGGATATAAATATAAAAGACTAGAGAGACAGATACCTACTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000007329-10-9,11-9-2/2
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.069 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0142914=MBD=WD(100=39.2),PF0503311=Pre-SET=PU(49.6=30.2)
A:
NA
C2:
PF0503311=Pre-SET=FE(33.9=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Mouse
(mm10)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACAGAAAACCAGGAAATTCCCCC
R:
CCAGTAGGTATCTGTCTCTCTAGTCT
Band lengths:
336-677
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development