BtaALTD0021504-1/2 @ bosTau6
Alternative 5'ss
Gene
ENSBTAG00000004177 | TANC1
Description
tetratricopeptide repeat, ankyrin repeat and coiled-coil containing 1 [Source:HGNC Symbol;Acc:HGNC:29364]
Coordinates
chr2:37293860-37295356:-
Coord C1 exon
chr2:37295255-37295356
Coord A exon
NA
Coord C2 exon
chr2:37293860-37294141
Length
0 bp
Sequences
Splice sites
5' ss Seq
GAGGTAGGG
5' ss Score
7.81
3' ss Seq
TGATTTTTTTTTCCCCTAAGCAC
3' ss Score
5.72
Exon sequences
Seq C1 exon
CAACGAGCTCAACCAAATTGGAAGACCTGAGTTATTTGGACGGACAGAGAAATGCTCCCCTTCGGACATCAATTAGGTTACCGTGGCACAATACAGCTGGAG
Seq A exon
NA
Seq C2 exon
CACGATTTGCTCCCTACAAGCCACAAGACATTTTGTTGAAACCATTATTGTTTGAAGTACCAAGCATAACCACAGACTCTGTGTTTGTGGGAAGGGATTGGCTCTTTCACCAGATAGAAGAAAACTTGAGGAACACAGAACTGACAGAAAACAGAGGCGCGGTGGTTGTTGGAAACGTGGGCTTTGGGAAGACGGCTATCATTTCTAAGTTGGTGGCACTGAGCTGCCATGGAAGCCGCATGAGGCAGATCGCTTCCAACAGCCCCAGCTCATCAACGAAAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000004177-23-25,24-25-1/2
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.429 A=NA C2=0.189
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF131911=AAA_16=PU(80.7=70.5)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGTGGCACAATACAGCTGGAG
R:
CCCTTCCCACAAACACAGAGT
Band lengths:
117-138
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development