BtaALTD0022667-1/3 @ bosTau6
Alternative 5'ss
Gene
ENSBTAG00000012622 | TRA2A
Description
Bos taurus transformer 2 alpha homolog (Drosophila) (TRA2A), mRNA. [Source:RefSeq mRNA;Acc:NM_001046380]
Coordinates
chr4:32251807-32252314:-
Coord C1 exon
chr4:32252198-32252314
Coord A exon
NA
Coord C2 exon
chr4:32251807-32251874
Length
0 bp
Sequences
Splice sites
5' ss Seq
CCGGTACAG
5' ss Score
5.65
3' ss Seq
TAATCTTTTATTTCCTACAGAAG
3' ss Score
7.93
Exon sequences
Seq C1 exon
TGGTGGCGGCGGCGGCGGCGGCGGTGGTGGAGGTGGAGGAGGTGGCAGACGTCGAGATTCTTACTATGATCGAGGATATGATCGTGGGTACGACAGATATGAAGACTATGATTACCG
Seq A exon
NA
Seq C2 exon
AAGAAGATCACCTTCTCCTTATTACAGTCGATACAGATCACGATCAAGATCTCGATCCTACAGCCCAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000012622-14-12,15-12,16-12-1/3
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.698 A=NA C2=0.917
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGGGTACGACAGATATGAAGACT
R:
TGGGCTGTAGGATCGAGATCT
Band lengths:
101-107
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development