RnoALTD0031716-1/2 @ rn6
Alternative 5'ss
Gene
ENSRNOG00000009156 | Tra2a
Description
transformer 2 alpha homolog [Source:RGD Symbol;Acc:1562563]
Coordinates
chr4:78906377-78907214:-
Coord C1 exon
chr4:78907089-78907214
Coord A exon
NA
Coord C2 exon
chr4:78906377-78906444
Length
0 bp
Sequences
Splice sites
5' ss Seq
CCGGTACAG
5' ss Score
5.65
3' ss Seq
TCAGCTCTCATTTTTTACAGAAG
3' ss Score
7.36
Exon sequences
Seq C1 exon
TGGTGGTGGAGGTGGCGGAGGAGGAGGTGGTGGCGGCGGTGGTGGTGGAGGTGGTAGACGGCGAGATTCTTACTACGATAGAGGATATGATCGAGGCTATGACAGATATGAAGATTATGATTACCG
Seq A exon
NA
Seq C2 exon
AAGAAGGTCGCCTTCTCCTTACTACAGTCGCTACAGGTCACGATCAAGATCCCGTTCCTATAGCCCAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000009156-20-16,21-16-1/2
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.717 A=NA C2=0.917
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGTGGTAGACGGCGAGATTCT
R:
GCGACTGTAGTAAGGAGAAGGC
Band lengths:
108-114
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]