BtaALTD0023537-2/2 @ bosTau6
Alternative 5'ss
Gene
ENSBTAG00000008428 | UPP1
Description
uridine phosphorylase 1 [Source:HGNC Symbol;Acc:HGNC:12576]
Coordinates
chr4:7531611-7532870:-
Coord C1 exon
chr4:7532824-7532870
Coord A exon
chr4:7532712-7532823
Coord C2 exon
chr4:7531611-7531725
Length
112 bp
Sequences
Splice sites
5' ss Seq
AGCGTGAGT
5' ss Score
8.2
3' ss Seq
GTGTTTCTCCCTGGTTCTAGCAC
3' ss Score
8.8
Exon sequences
Seq C1 exon
TTTGTGTGTGTTGGAGGAAGCCCTTCCCGGATGAAAGCCTTCATCAA
Seq A exon
GTACGTGGCCATGGAGCTGGGCTTTGCCCACCCGGGTGCTGACTATCCCAACATCTGTGAGGGCACTGACCGCTACGCCATGTTTAAAGTGGGCCCGGTGCTGTCGGTCAGC
Seq C2 exon
CACGGGATGGGCGTCCCCTCCATCGCTATCATGCTGCATGAGCTCATCAAGCTGCTGTACCATGCTCGCTGCTCCGGCGTCACCCTCATCCGCATTGGCACTTCCGGTGGGATAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000008428-8-4,9-4-2/2
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0104815=PNP_UDP_1=FE(20.7=100)
A:
NA
C2:
PF0104815=PNP_UDP_1=FE(15.1=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTTGTGTGTGTTGGAGGAAGCC
R:
CTATCCCACCGGAAGTGCCAA
Band lengths:
162-274
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development