RnoALTD0032986-2/2 @ rn6
Alternative 5'ss
Gene
ENSRNOG00000004972 | Upp1
Description
uridine phosphorylase 1 [Source:RGD Symbol;Acc:1305566]
Coordinates
chr14:89328965-89331070:+
Coord C1 exon
chr14:89328965-89329117
Coord A exon
chr14:89329118-89329123
Coord C2 exon
chr14:89330956-89331070
Length
6 bp
Sequences
Splice sites
5' ss Seq
AGCGTGAGT
5' ss Score
8.2
3' ss Seq
GCATTTCTCTCTGTTTTCAGCAT
3' ss Score
9.95
Exon sequences
Seq C1 exon
TTTGTGTGTGTTGGTGGAAGCTCCTCCCGGATGAGCGCCTTCATCAAGTATGTGGCCGCAGAGCTGGGCCTTGACCACCCAGGGAAAGAATATCCCAACATCTGCGCAGGCACTGACCGCTACGCCATGTATAAAGCCGGGCCCGTGCTGTCT
Seq A exon
GTGAGC
Seq C2 exon
CATGGCATGGGCATCCCTTCCATTGGGATCATGTTGCATGAGCTCATCAAGATGCTGTACCATGCCAGGTGCTCCAACATCACCATCATCCGCATTGGCACTTCAGGAGGGATAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000004972-14-10,15-10-2/2
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0104815=PNP_UDP_1=FE(20.7=100)
A:
NA
C2:
PF0104815=PNP_UDP_1=FE(15.1=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACTGACCGCTACGCCATGTAT
R:
AGCATCTTGATGAGCTCATGCA
Band lengths:
98-104
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]