BtaALTD0023843-2/2 @ bosTau6
Alternative 5'ss
Gene
ENSBTAG00000012963 | VILL
Description
villin-like [Source:HGNC Symbol;Acc:HGNC:30906]
Coordinates
chr22:11486323-11488455:+
Coord C1 exon
chr22:11486323-11486423
Coord A exon
chr22:11486424-11486492
Coord C2 exon
chr22:11488318-11488455
Length
69 bp
Sequences
Splice sites
5' ss Seq
CAGGTATGC
5' ss Score
9.37
3' ss Seq
GTCGGTCCCCTGTTCCCCAGATA
3' ss Score
7.58
Exon sequences
Seq C1 exon
GTAAACTGCTTCAGGTGAAGCTAGACGTGGGCAAGCTGCACAGCCAGCCTGAGCTAGCCGCCCAGCTCAGGATGGTGGACGACGCTTCTGGGAGCGTGCAG
Seq A exon
GTGAGGAGCACTGGCTTGGCTGGGTGAAGATGTCTTCAGGTGAACCATGTGGCTGCTAAAGTGTCGCAG
Seq C2 exon
ATATGGTGTATCCAGGATTCACACAGGCAGCCTGTGGACCCCAAGCGCCACGGACAGTTGTGCGCTGACAGCTGCTACCTTGTCCTGTACACCTACCGGAGGATGGGCTTCGTCCAGCACGTCCTGTACCTGTGGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000012963-17-14,18-14-2/2
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
ORF disruption when splice site is used (sequence inclusion)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.043
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0062617=Gelsolin=PU(48.2=87.0)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGAAGCTAGACGTGGGCAAG
R:
AGGACAAGGTAGCAGCTGTCA
Band lengths:
173-242
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development