BtaINT0159758 @ bosTau6
Intron Retention
Gene
ENSBTAG00000012963 | VILL
Description
villin-like [Source:HGNC Symbol;Acc:HGNC:30906]
Coordinates
chr22:11486323-11488455:+
Coord C1 exon
chr22:11486323-11486423
Coord A exon
chr22:11486424-11488317
Coord C2 exon
chr22:11488318-11488455
Length
1894 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAGG
5' ss Score
10.07
3' ss Seq
GTCGGTCCCCTGTTCCCCAGATA
3' ss Score
7.58
Exon sequences
Seq C1 exon
GTAAACTGCTTCAGGTGAAGCTAGACGTGGGCAAGCTGCACAGCCAGCCTGAGCTAGCCGCCCAGCTCAGGATGGTGGACGACGCTTCTGGGAGCGTGCAG
Seq A exon
GTGAGGAGCACTGGCTTGGCTGGGTGAAGATGTCTTCAGGTGAACCATGTGGCTGCTAAAGTGTCGCAGGTATGCCCTAGTGCACGTCTGCACACAATCAGGGACCCTCGGGGGCATGTGTACACATACCCACACCGCCCCTGAGCCAGCTCATACTGTGTGTGATAGTATTGTCTCACACAGTGGCCACTTGCTGGTAACATGGCACTCAGCACAGTAACATCTGGACAATTAATTGTGCCCTTTTGTCGTATGTTTGACACAACCATACCTATTATATTATAGACACATACACCTTTGTCACTGCACTTATTCACAGTTACGTACACAGTTGCAAACATGTAGCTGTACAAACTCTACATCACACATGATCACACCCCCACACCCAACCTTCAACACAGTCACACCCTGTCAGCTCCCTGTCTGGGCTCAGACAGACGTCCTGGGAGATGCAGCGTTTGGGGGCTACTTCCAGGCTCTGTATAGGGCAGGGTTGCCTCTTGACTTACTGGGTCACCCCTGGTCAGGGCCCTTAATGTCTTCAGGACTCAGTTGTTTAGAAGGCTCATTTTTTAAAGTCTTTAAAATGGGGCTAAATCTGTGGTCCCACCTGGCCCCCAGGCTGGTGTGCGGGTGCTGTGGGATGATGGGAACAGGACAGTGGGCCTGTTTGAGGGGTGCTAGTTCTCAAGGTCGGCCAAGGTCAGAGAAAATACAGTTTCTCCAAGGTTCCCTCCAACTTTTGCCCTGATATGGATGGACAGTGGCAATGAGCGGGGAGGAGGCTGAGAATAGGAGGACGGGGAGCAGGGAGAGAGGATGAGAGGTTGGAGGACAGGGAGAGACTGAGGGAGGAGGGAGAAGACAGAAGCTAGAGGGAGGAGGGGGTAGGGCAGGGCGGGAGGGCTGAAGGCCCAGGAGAGGAGAAAGGGAATCAGGGAGAGGTGGGGTACCCAGGCAGAGACCAGCGGAAAATGGAGATAAGGGCAAGGAAGGCAGGAAGGAGGGGTCTGTAGCCCAGACCCCAAGTACCAAGGCAGGGACGGGACCCACCCACCCCAGCAGTGGGGGAACAGGCAGCCAAGGGGAGGACTCAAGCCAGGAGGCCTGGCTGCCAGGTGAGTGCAGCTCCTGGAGGCATGGGACGGGAGTCAGCCTCTTCTGCAAGAAGCAGGATGCTGGGTGCTCTGGTCTTTTCCAGAGACTGCTATCAGGCCTCAGGATGCCCCGATATTATTTCTTACTACATCAAAGTGAGCACTGTTACCCCCACTTTACAGGTGGAAAAAGATTTACACTTTACAGATTCACTTTACAGGTGAATCTCAGCATGGACTCACTGCCCATGTGGGTGACCAGGATTCGACCAGGATCTCCCTGGCTTGGCTCCCCACAGGAAAAAGAAATCATGCTAAGTGTGACAGACTGTTTCCTTTTCAGTCTTTGAACAGGCTTTGCTTTTCTAAATGACACTTGAGAAAAGGAAAATTTTCCAAGAACCCCTGGGCCTTGCTTCCACCCAGCTTCTGCTCCCCTGGCCTGAGCAGCAATCAGCAGTGCAGAACCTGTCTGGCCCTTGCTCGGCTGTGGCTGGTGGGCTCAGGCTGGGGTGGCCTGAAGCAGCCGGGGCAGCCTCTGGAGTCCTCCCTACTTGTTTGTTGCAGGTGCTCCACACCAACTCAGAGTCCTGGCTGCGAGCAGCCTGGCGCAGATGTAGGCCCCAGGGGTCTGTGGGGGGAGCACAGAGCCTGGGGTGGGTGCACACCTCGGAGGGAGCCCCTTGCCTGCACAGGTGCGGCCGGCCTCTGGCTGCGGAGAGCTTCCTGGCTGGACAGGTGGGTGGGCTGGTTTAGGTGGAGGCACCACCCGTGCCTGTCGGTCCCCTGTTCCCCAG
Seq C2 exon
ATATGGTGTATCCAGGATTCACACAGGCAGCCTGTGGACCCCAAGCGCCACGGACAGTTGTGCGCTGACAGCTGCTACCTTGTCCTGTACACCTACCGGAGGATGGGCTTCGTCCAGCACGTCCTGTACCTGTGGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000012963:ENSBTAT00000017231:11
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.043
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0062617=Gelsolin=PU(48.2=87.0)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTCAGGTGAAGCTAGACGTGG
R:
CTGCCACAGGTACAGGACGT
Band lengths:
230-2124
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]