RnoINT0162873 @ rn6
Intron Retention
Gene
ENSRNOG00000011446 | Vill
Description
villin-like [Source:RGD Symbol;Acc:1304843]
Coordinates
chr8:127745312-127747484:+
Coord C1 exon
chr8:127745312-127745415
Coord A exon
chr8:127745416-127747346
Coord C2 exon
chr8:127747347-127747484
Length
1931 bp
Sequences
Splice sites
5' ss Seq
GAGGTGAGG
5' ss Score
8.41
3' ss Seq
ACAGGTCCCTTGCTCCTCAGGTG
3' ss Score
7.77
Exon sequences
Seq C1 exon
GTAAACTGATGCAGCAGGTAAACCTGGAGGTAGGCAAGCTTCACACACAGCCCGAGCTCGCGGCCCAGCTCAGAATGGTGGACGACGGCTCTGGGAAGGTGGAG
Seq A exon
GTGAGGGCACTGGCTTGTGGGTGATGGTGTGCACACAAGGATAGACTCTGCCTGGAGAACAAATGACTTGGGGGTGAAGTGGGGAGGGGAGGCCACGCCGGTAAACCCAGCACTCTGGGGGAGGGACTGTCAGGAGTTCGAGGCCAGTCTGGGCTACATGAGACACTGTCCCAACCAAAAAGACCCAAGCACATATATGTGCCCAACCACACACAACCGGGGATATAGTCAGGGAGATAGAAACACACAAGCCCTCTCTCCAACAGCTGGCTCATACAGTCAAAGCAAGTCATACAAATCACTCAGGACCAAGCACACCCTGTGGCCAACACAGGTGTGCAACCATACAGATCGAAGCCCTGAGCACTCCTAACCCCTAACATGCAGTCACGAAGCCCTCCTCTGGCCTCAGACCAGTGTTCTAGAATCTGGAGGGGCTGAGGCTGGCTGGCAAGCATTGTGCAGTAGAGGTGCACGTACTGACACATAAGGCAGACCCCTCCATTCTCACAAAACTGCTTTTAAGTCCATAAAATAGAGGCAGGAATTATGATCCAGTCTCGTGCCCAAGCTAGCATGGGGCTGCCGTGAGACCGTGGGAACAAGACTCCTGTGCCGGGGAGGGGGAGCTGCCAGTTCTCTAGGTAAGCAGAGGTCAGAGATAGGAGAAGCTCTGTCTGCGTTTGTGTTTATATGGACGCTGAGCAGGGATGGATGGGATGAGGCGGAGAGAGGAGGAAAAGGAGGGGAAGGGAGAGGGGAGTCAGGGAGAGAGGAAGACCGGGAGGGAGAGGAGACAGGGTGATGGGGGAGAGGAAGGCAGGGAGGAGAGGGCTTGGGGAGAAGGAGAGGTTTATGGAAGGGAGGGGCAGACAGAGGGAGGGAGATAAAAGCTGGACAGCAAGGAAGCAGGAAGGTGTCTGGGGTCAGCTCCAAGCACAAAGGCAAGGAACCTCTAGGTAGGAGGGCTCCTTCTGGGTATGTGCACCTTTGGGTAGATTTTGGTCTGTGGCAGCCTGAGTTTCTGATGGGCTTGTCTAGAGAGGACACCCCGTGGTGAAGCTCTCAGTCAGTGTTGGGGAAGGGCACCAGATACTGTTTCCAGACACGCTGAAGGGCAGGCGGGTGGGTGCTGTGTCTCCCCGGCTTACAGGAGGGAAGAAGCGGGGCTCAGGAGGGTCTCGTGGCAACCCGCACAGACCCTGGCTTCCACCAGTTCTGTCTGTTCTAAAGCCGAGGTGTGGCCCCTGCCCTCACAAGCCGTCACTCAAACAAATGTAAGCAGGCACCATCATTTTAGACAGGGTCTTGCATATCCAGAGCTGGCCTCAAATTCACTGTAGACTCAAGGCTGGCTTTGAACTGCTGATCCTCCTGCCTCTCCACAGGTGGAATCCCAGTTCTGAGAGGTGTTGGGGATTAACCCAGGACATTGCCACACTGTCCCAGCATTCCACCAACAGAGCCACACCCCCAGCCTTGGGTTTTGTTTGTTTAGGGTTTTTTTTCCATGGACTTTGTTAATGTTAATGACATTTTAAAGAAAAAAAGAAATTTCCCTTCCAGAGTGCCACAGCCTCCCTTCCAGCCCTACTTCTGTCTCCAGGGAGCCTCTGCATGGGGAGAGGGTGCTGACTGTCCCTAACCAGGGATACAGCTGGTGGGCTCTAGGCTGAGGTGGCCTCCAGGAGCTGGGCCTTCCTCTTATCCCAGGGACAGCATGCATGTCTGGACTGAGGGCAAGCCAGCAAAGGCATGCGGCTACTGAGGTCTGAGGGGAAAGGGTCACTCGCAGGTCCGGAGGAGGACACAGAGCTGGACAGGAGGCTTGCTGGCACCGCTGAGCCAACAAGAGCTTTCCAGCTTAGATGCAGGTGGGCAGGCCACAGCAGGTAAGGTTCGTCTGTGCTCACAGGTCCCTTGCTCCTCAG
Seq C2 exon
GTGTGGTACATCCAGGGCTCACAAAGGCAGCCTGTAGATCCCAAGCACCATGGCCAGCTGTGCTCAGGAAACTGCTACCTTGTCCTCTACAAGTACCAGAAACTGGGGCGTGTCCAGTACATCCTGTACCTGTGGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000011446:ENSRNOT00000015888:11
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.043
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0062617=Gelsolin=PU(48.2=87.0)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACTGATGCAGCAGGTAAACCT
R:
CTGCCACAGGTACAGGATGTA
Band lengths:
238-2169
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]