GgaINT0102134 @ galGal4
Intron Retention
Gene
ENSGALG00000005763 | VILL
Description
villin-like [Source:HGNC Symbol;Acc:HGNC:30906]
Coordinates
chr2:4584700-4585116:+
Coord C1 exon
chr2:4584700-4584800
Coord A exon
chr2:4584801-4584978
Coord C2 exon
chr2:4584979-4585116
Length
178 bp
Sequences
Splice sites
5' ss Seq
GAGGTGAGA
5' ss Score
7.66
3' ss Seq
TTACTGACATCTCACACTAGGTG
3' ss Score
7.74
Exon sequences
Seq C1 exon
CCAAGGTGGAGCAGGTGAAGTTTGACACCACTCAGCTCCATGCAAGACCAGAGCTGGCTGCTGAGCAGAGGATGGTGGATGATGCCTCTGGGGACATAGAG
Seq A exon
GTGAGAGAGCTCCTTTGGCAATTATCACTGTTTCCAAACCTTTCTGCCTTTTCACACACACAGCAGCTGTATGAACTGTGAACACGTGCCCACCTTTCCTCCCCTACAATTATGTCTGTGCCCATTGCACTCTGTCCTTACATTGAGTACCCTGCTGCTTACTGACATCTCACACTAG
Seq C2 exon
GTGTGGAGAATTGAGGACCTGCAAATGCAGCCGGTGGATCCCAAGACATACGGGCAGTTCTACGGAGGTGATTGCTACCTGGTCCTGTACACCTACCTCAGATCTGGCCGGCCTCACTATGTCCTCTACATGTGGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000005763:ENSGALT00000009258:11
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0062617=Gelsolin=PU(48.2=87.0)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGGTGGAGCAGGTGAAGTTTG
R:
TAGAGGACATAGTGAGGCCGG
Band lengths:
226-404
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]