HsaINT0180199 @ hg19
Intron Retention
Gene
ENSG00000136059 | VILL
Description
villin-like [Source:HGNC Symbol;Acc:30906]
Coordinates
chr3:38040830-38043084:+
Coord C1 exon
chr3:38040830-38040930
Coord A exon
chr3:38040931-38042946
Coord C2 exon
chr3:38042947-38043084
Length
2016 bp
Sequences
Splice sites
5' ss Seq
GAGGTGAGG
5' ss Score
8.41
3' ss Seq
ATTGGTCCCTTATTCCCCAGGTG
3' ss Score
10.39
Exon sequences
Seq C1 exon
ATAAATCGATTCATGTAAAGCTGGACGTGGGCAAGCTGCACACCCAGCCTAAGTTAGCGGCCCAGCTCAGGATGGTGGACGACGGCTCTGGGAAGGTGGAG
Seq A exon
GTGAGGGGTACTGGGTTAGCTGGGGGAAGATGGGCACACGGAGGTAAGCTTTGCCTACAGGTAAACGGTATGACTGCTATCTAAAGTGACCCAGGTGCACATCCACACACAATCAGGGACACAAAGGGACACGTGTACATTTACATACTCTCCTAGCAGGCAGTTCATACATAGTCACGCCTAATCATACACAGCCACGGGCACTCACACAACACAGACACACAGTACAGTAACACTTGGACACTTAAATTCTCCCTGTAGTCACATGTAGGACAAAATCAAACATATGCTTATACAGACACACATACTAACACCTTGTAATTGCACATAATCACAGCCAAGTACACAACCACAAATATGAAGCTGCAAAAACTCTACATCAGACATGACCACGGTCACACACAACCATCAATCCGCAGAGACACACCAACACAGACACACGATCACACATCATCAATTACAGCCCCACACACCCAACCCCAATTAACAGCCATACACTGTCAACCACTCATCTGGTCTCAGCCCAGTGTCCTGCGAGACGCAGGGGTTGAGGGCTACTTCCAGGCTCTGTAGAGGGTGTGGTTGTATCTTGACTTGTTGGCTGACCCCCTAGGCAGAGCCCTGAATTTTTTAGGCCCTAGTTTTTAAATAAAGTGGGGTCAGAAACTGTGGTCCCATCTGGCCCCAAGGCTGATGTGGGGATCCTGTGGTCTTGTGGGAACAGAACTGCTGGGCCTATGCGAGGGGTCCTAGTTCTCGAGGTAGGTGGAGGTCAGAGAAAAGGCAAGATTTCCTTCTTCCTTTGCCCTAATATGGATGGACAGAAGTGATGAGTGGGAAGAGACTGAGAGAGGAGGAGATGGGGCAAGGGGGAAGAAGGGGGAGACAGGGAAAGAGGAAGACAGGGAAGGAGCACAAAGAGAGACAGAGAAGAAAAGACTGGGAAGGACAGGGGATGAGGAGGAGGCAGAGGGAAGGGAGGAGGAGGTGGGGTGGAGGAAGAGCAGGGAGAGAGGGGGTACAGGGAGAAGAGAGGGAGGGTCAGTGATAGATGGGATACACAGAGAGAGACAGAGAGCCAGACAGTGGGAGAGGGAGACAGGAAAGCAGAAGGAAAGGCGAGGGACGGAGGGAAAGAGAGCCCTGGGACTCAGGTGCCAAGCACAAAGTCAGGGACAGGATCCCTCCTGGTAGGCAGTGGACAGGCAGGCAGAGACAGGGCCTGAGCCAGGGGTCCTGGCTGCCCGGTAATTGCCACTGTTAGGTGGCCTGTAGTCAAGTCAGCCACTTTTGTGAAAGACAGGGCTCTGGCTGCTCTGGTCTGGAGGTCGGCTCCCCAGGGACAACTGTCAGGGTCAGTGTGGGAAAGGACACCCAGGCATTGTCTCCTGCCATGCAGAGGTGAGGTAAGGGAGGCGTCATCATCCCCAATATACAGGTGGGAAAGGCCCGAAGCTTAGAACAATGTCACTGCCAACACAGGGCCTACCTGGGATTTGACCAGAGTCCGCCTGGCTCCAGGCTCTGCCACCCACAGGAAGAAGAAACTACACTGACAGATGTGAGACAGTGTTTCCCCTTCAGTCTTTGAACAGGCTTTGTGTTTTCTAAATGACACTGGATAAAAGGGAATTCATTCAAGAGCTCCAAGGCTTCCCTTTCCGCCCGGCTTCTGTTGCCCTGGCCTGAGCAGCGAGCAGCTGGGAGGGGACTGAACTGCCCCTAACCAGGGTTGTGGCTGGTGGGGTTGGGACTAGGGCTGGGCATGTGGCTGGGATTGGGCCCATCTCCCAAGTGTGGTGGGTTTCAGGGGTCCGTGGGGAAAGGGTCACCTGCAGATCCTTGTACAAAGCCCAGCACAAGGCCCAGAATGGGCCTGGAGCTGAGGGTGGGCCCCTGGCCTGCGTGGATGAGGAAGGCCTCAGAGGCTGGGGAGAGCTTTCCGGTTGGGTACAGGATGGGTGGGCTGGTTCAGGAAGAGCAGCCACCTGTGCCCATTGGTCCCTTATTCCCCAG
Seq C2 exon
GTGTGGTGCATCCAGGACTTACACAGGCAGCCCGTGGACCCCAAGCGTCATGGACAGCTGTGTGCAGGCAACTGCTACCTTGTGCTCTACACATACCAGAGGCTGGGCCGTGTCCAGTACATCCTGTACCTATGGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000136059-VILL:NM_015873:10
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.064 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0062617=Gelsolin=PU(48.2=87.0)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)