DreINT0022372 @ danRer10
Intron Retention
Gene
ENSDARG00000001909 | VILL
Description
villin-like [Source:HGNC Symbol;Acc:HGNC:30906]
Coordinates
chr24:20287369-20287680:-
Coord C1 exon
chr24:20287580-20287680
Coord A exon
chr24:20287507-20287579
Coord C2 exon
chr24:20287369-20287506
Length
73 bp
Sequences
Splice sites
5' ss Seq
CAGGTATGA
5' ss Score
9.46
3' ss Seq
CACCACTGCTTTGTATTCAGGTT
3' ss Score
7.77
Exon sequences
Seq C1 exon
CTAAAGTGGATCAGGTGAAGTTTGACGTCATGGAGCTTCACGCACAGCCGAAACTGGCTGCTCAGGAGCGGATGGTAGACGATGCCTCAGGACAAGTTCAG
Seq A exon
GTATGATAAAATATTAATACATTTGGGATTCCTGTCGCACTGATATTGAACATCACCACTGCTTTGTATTCAG
Seq C2 exon
GTTTGGCGGATCGAGAATCTTGAACTCAAGGAAGTGGATCGAAGCACTTATGGACAGTTTTATGGAGGAGACTGTTATCTAGTTTTGTACACCTACAACAGAGCCAACAAACCTCAGTATATCCTCTACATCTGGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000001909:ENSDART00000048940:12
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.029 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0062617=Gelsolin=PU(48.2=87.0)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGAAACTGGCTGCTCAGGAG
R:
ACTGAGGTTTGTTGGCTCTGT
Band lengths:
171-244
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]