BtaALTD0024461-2/2 @ bosTau6
Alternative 5'ss
Gene
ENSBTAG00000004361 | ZBTB37
Description
zinc finger and BTB domain containing 37 [Source:HGNC Symbol;Acc:HGNC:28365]
Coordinates
chr16:56696932-56699664:+
Coord C1 exon
chr16:56696932-56697496
Coord A exon
chr16:56697497-56697888
Coord C2 exon
chr16:56699565-56699664
Length
392 bp
Sequences
Splice sites
5' ss Seq
CAGGTAAGT
5' ss Score
10.86
3' ss Seq
TTTTGCTCCTCTTCCAACAGATT
3' ss Score
11.4
Exon sequences
Seq C1 exon
TCCCTGACTTCAGCAACTCTGTCCTGAGCCATCTGAACCAGCTGCGCATGCAGGGCCGTCTCTGTGACATCGTGGTCAACGTGCAAGGACAAGCTTTTCGGGCTCACAAAGTGGTCCTGGCTGCCAGCTCCCCCTACTTCCGGGATCATATGTCCTTGAATGAGATGAGTACTGTCTCCATATCAGTCATCAAGAACCCTACTGTTTTTGAACAGCTCCTTTCTTTCTGTTACACGGGGCGGATCTGCCTGCAACTGGCGGATATCATCAGCTACCTGACCGCTGCCAGTTTTCTGCAGATGCAGCACATTATAGACAAATGTACCCAGATCCTGGAGGGCATTCATTTCAAAATTAACGTGGCTGAGGTTGAAGCCGAATTAAGTCAAACGAGGACCAAGCATGCAGAGGGACCTCCGGAGTCTCACAGAGTTACACCAAATCTAAACCGCTCCCTCAGCCCCCGACATAATACCCTCAAGGGAAACCGGCGAGGTCAG
Seq A exon
GTGAGTGCTGTCCTGGATATCCGGGAGCTCAGTCCTCCCGAGGAGTCCACCAGCCCGCAGATTATTGAACAGAGTTCTGATGTAGAGAGCCGGGAACCCATTCTTCGAATCAACCGAGCAGGACAGTGGTACGTGGAGACAGGGGTAGCAGACCGAGGAGCCCGGAGTGACGATGAAGTTAGAGTCCTGGGAGCAGTACACATCAAAACGGAAAATCTAGAGGAGTGGCTTGGGCCTGAGAATCAGCCTTCCGGAGAAGATGGGAGTAGTGCAGAGGAAGTCACGGCCATGGTGATTGACACCACAGGCCATGGTTCTGTAGGACAGGAAAATTATGCTTTAGGATCTTCAGGAGCCAAGGTGGCTAGGCCAACAAGCAGTGAGATTGACAG
Seq C2 exon
ATTTAGCCCCTCCGGCAGTGTTGTTCCCTTGACGGAGAGACACAGAGCCAGAAGTGAGTCTCCTGGGAGAATGGATGAACCTAAGCAACCCACTTCCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000004361-2-3,3-3-2/2
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.463 A=NA C2=1.000
Domain overlap (PFAM):
C1:
PF0065126=BTB=WD(100=33.9)
A:
NA
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTCTTTCTGTTACACGGGGCG
R:
AGGAGACTCACTTCTGGCTCT
Band lengths:
344-736
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development