BtaALTD0024590-1/2 @ bosTau6
Alternative 5'ss
Gene
ENSBTAG00000017731 | ZFAT
Description
zinc finger and AT hook domain containing [Source:HGNC Symbol;Acc:HGNC:19899]
Coordinates
chr14:8277656-8284283:+
Coord C1 exon
chr14:8277656-8277774
Coord A exon
NA
Coord C2 exon
chr14:8284157-8284283
Length
0 bp
Sequences
Splice sites
5' ss Seq
GAGGTACTT
5' ss Score
7.82
3' ss Seq
GATTCTGTGTTTTTGTTTAGCCA
3' ss Score
6.06
Exon sequences
Seq C1 exon
GCGGTTTGAAGTGTCCAGTGTGCAGCTTCGTCTATGGCACCAAATGGGAGTTCAACAGGCACCTGAAGAACAAGCATGGCCTGAAGTTGGTGGAGAGCGAAGGAGACCCCAAGTGGGAG
Seq A exon
NA
Seq C2 exon
CCAGCAACAGAAGCTCCCGAGGAGCCTTCCACCCAGTACCTGCACATCGCAGAAGCTGAAGAGGACGTTCAGGGCACACAGGCTGCCGTGGCCGCCCTTCAGGACCTGAGATACACCTCAGAGAGTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000017731-18-18,19-18-1/2
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.350 A=NA C2=0.628
Domain overlap (PFAM):
C1:
PF138941=zf-C2H2_4=WD(100=60.0)
A:
NA
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AATGGGAGTTCAACAGGCACC
R:
TCTTCAGCTTCTGCGATGTGC
Band lengths:
139-196
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development