RnoALTD0034367-2/2 @ rn6
Alternative 5'ss
Gene
ENSRNOG00000025140 | Zfat
Description
zinc finger and AT hook domain containing [Source:RGD Symbol;Acc:1310886]
Coordinates
chr7:109057795-109063114:-
Coord C1 exon
chr7:109063029-109063114
Coord A exon
chr7:109062996-109063028
Coord C2 exon
chr7:109057795-109057918
Length
33 bp
Sequences
Splice sites
5' ss Seq
GAGGTAACA
5' ss Score
8.1
3' ss Seq
GACATGATATTTTTATTTAGCCA
3' ss Score
3.98
Exon sequences
Seq C1 exon
GTGGTCTGAAGTGTCCTGTTTGCAGCTTTGTGTATGGAACCAAATGGGAGTTCAACAGACACTTGAAGAACAAGCATGGCTTGAAG
Seq A exon
GTAGTGGAGATTGATGGAGACCCCAAATGGGAG
Seq C2 exon
CCAGCGACAGAGACTCCCGAGGAGCCCTCCACCCAGTATCTCTACATCACCGAGGCTGAAGATGTTCAGGGGACACAAGCAGCTGTAGCTGCACTTCAGGACCTGCGATATACCTCCGAGAGTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000025140-37-24,38-24-2/2
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.210 A=NA C2=0.452
Domain overlap (PFAM):
C1:
PF138941=zf-C2H2_4=WD(100=82.8)
A:
NA
C2:
NO
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGAAGTGTCCTGTTTGCAGCT
R:
GAGATACTGGGTGGAGGGCTC
Band lengths:
122-155
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]