RnoINT0167639 @ rn6
Intron Retention
Gene
ENSRNOG00000025140 | Zfat
Description
zinc finger and AT hook domain containing [Source:RGD Symbol;Acc:1310886]
Coordinates
chr7:109057795-109063114:-
Coord C1 exon
chr7:109063029-109063114
Coord A exon
chr7:109057919-109063028
Coord C2 exon
chr7:109057795-109057918
Length
5110 bp
Sequences
Splice sites
5' ss Seq
AAGGTAGTG
5' ss Score
5.56
3' ss Seq
GACATGATATTTTTATTTAGCCA
3' ss Score
3.98
Exon sequences
Seq C1 exon
GTGGTCTGAAGTGTCCTGTTTGCAGCTTTGTGTATGGAACCAAATGGGAGTTCAACAGACACTTGAAGAACAAGCATGGCTTGAAG
Seq A exon
GTAGTGGAGATTGATGGAGACCCCAAATGGGAGGTAACACTTTAAGTGTGGTCTGGTCTCAACATGTTGAAACACAGGTGACAAGTCAGGTGAGCCCAGGTGCTGGGCACAGTCAGCCCTCAGGATCACCGGAAGTGTTCCTTGGAAATCCTCGGCAGCCATTTCAGATCAGGGCTCTGGGTCCCTCTGAGTGAGATCTGAGCCACCAATGTGGATTTATTCTGGGTTGAATTTAGACATTTTTGTGAATGTTGTCTTGGCTTCTCCAGCCCACAAACCCTGTTTTAGATGTAACACCCAGCAGAGTAGAAGGCAAATGGTCTGTTGCTGTCCTCACAGAGAGAATTGGAAGGGGCCCTATTCCCTGGTTCCAGGTCCTTCGCATTAGCTGTTTCCCTAAGGAATTTGAATCTGTCACCATTATGAGCATCAGCAGCCACCCAAGTGTTCAGGTACCAGATGCTACTACAATGGATAGATTGCAGTCATTCTCAGCAGGGCTTCTGAGACTCCGTTTTATTGGGGTTTTGATCTGCGTGACTTTTTGTTGTGGGAGGACTACTCTTGACCTTATAGAAAGTTTAGCTGCATTTCTAGCCCTTTCCTACCAGATACCTCTAGCATCACCCTGCCTCTCTGCACCTCATTGAGACAATTACAGATGTTTCCAGACACTGCCAAGATTCATCACGTTCTGGCAATCACAGACACCTCCAGCTGATGGTAGCTTTAGAGGGTACCTGGTTATAACCAGTCAGGAGTAAAGTCTTTGAAACAGTTTATAGCACATAGGAATAATGAAACGCCATGACTGTGTGGAGATTACTTCGGAGTGTGAGGAAAGCTTGGCCCATGGAAGAGCATATGTTAGTATCACTAACCATGAACCAGGGGAGAAACGGAGTGATCATCTTCACAGATGCCAAAAGGCCTGACAGACAGCATCGCTCACCTTTTAGACACGTTCAGTAGAATGTAGTGGATGCTCCTAAAGAGGACAAAAGTATTTGTGTTGGCCATAAGCCAGCATCTTGTTTCATTTGGAAACACTAGAGGGGTTTCACTAAAGTCAGAAGCAAGTAACTATGGAAACAGTGTGTTGCTGGATACTCTAGGGCCAAAGTCAAAGAGCCGATGAGTGCTGCAGCCTGCTCAGAGTGCTTGCCACAGTACTATGCTTAATCTCTGCAACCATTTCTTGTGTATTTTATAATTGAGCAGTGTTCTCTTGAGAACGTTCTGTATATAAGTGGAACTGTGTTTTCATCGTTTGAGATGTTACAATAGCATAGGCCTAAGCTACATGGAGCCTCAGTGCCAACCTGGAATCAAAGAACTCAAAACTCATGTGATTTACTGTTATTATTATTTACCATCATCTACATGATGAAAATCCCTAGCTAAAATAAACAAAAATAATCAGAATCCACAGTGCTGTAAACTCCAAAAGCTTTGGGATATCAATGTGGCCCCCACAAGTGGAAAATTCCCATCTCACCTCATTTGAAATACTTGTGGAGGAAACAATGATTCTGATTTGCTTCAAAGCTACCAGTGGTAGAGCCACAGCAAGATTAGCACAATGTGTGATTCATTTCCTGGACCCGCCTGATAGCCTGAGTTTGATCCCCGGAACCCATGTAAAATGGAGTTAAAGAACCAACTCCACAGTTATTGTCTGACCTCTAAATGTGCATGTGGTGTGCACACCGACACTCCCTCACAAATCGAAAAGCATGGCATGGAGGACGTGGGGCAACGGGTGAGACAACTGACTGTGAGTTGATAATTGTTTAAATCAGGTGATTGAGTGACCCATATGTGAAGCTTTATTATTCCTTTCTCTTTACTTGTATTTGTATTTGAAGCATTTTATAAATTATGATTAATGGGTTAGGGTTAGGGATTACAGGCTTTAGACTTATCTGTGTTATCTATAAGCTGTTTGACTTGAGCCGTTGTTGACTCAGTTTACCCTTGGTGTTGTCAACCATGCAGTAGGCTGATAGATTGAAAAACTGACAGAGCGAATACTGTAACATGCTGGAGTCCCTGTGTGACAGACAAGCCCTTTGTGTTGTAGGTGCTGAGGACAGGCTCAGTGTCTCATTACCATAGATGGTGCCATGATTATTTTCCAGAACTCTCAAGTTCATGCTACAGAATGTGTTGTCTGTTAAAGAGACAGACTTGGAATACCAGTTCATGGTGGGAAGCTCACTAAGTCAGGTACCTCCAGCAGAGGCGAACTATTAGTAAGGCTTTGACCCTCACAAAACAGTACTCACAAAAATAAGCACTTGCAGGGGTTGGGGAGTTAGCTCAGTGGTAGAGCGCTTGCCTAGCAAGCGAAAGGCCCTGGGTTCGGTTCCCAGCTCAAAAAAAAAAAAAAAAAAAAAAAGCACTGCCTCTCGAAGTGAGACAGCTAAACATAGAGGAAGCTGGACACAGGGTGGCCCCCAGTAGAATAACACACTGGCTGCCTGGCAATTTAGATTGTTACTTAACTCCTAAGAGTGCCTTGCAGAGAACACAGGCCTTACTGAATGTCATGATTACCTGGGTTCCTCAGAAGGAGAGCAGCTCTTTCATAAGCTAAGGCACTTGGGTCTATAGTTGGGTAGTGCACTCTGTCTTAGTAAGAGTTTTATAGCTGTAACAAAAGGGCACAGATTAAAAGCAAGCTGGGGAGGGAAAGGTTTATTCAGCTTATATGTCCACATTGCTGTTCATCACCAAAGCATGTCAGGATCTGAACTCAAACTGGGCAGGAACCTAGAGAAGGAGCTGATACAGAAACCACGGAGGGGAGCTGCTTCCTGGCTTGCTTCTCCTGGTTTGCTCAGCCTGCTTTCTTATAGAACCCAGGACCACCAACCCAGGGATGACACCAAGATACCACAGTAAAAACATAAATAACTAAAGGTCCTATAGTCTTTACAAAATTGGATACATTAAAATTTCAGTTCCTTTAGAATAGACAATCTCCTTTAAAATACAAAGTCTTTTAAAATTCAAAGTCTCCACTGTGGGATTATTTCCCAAAGGAAAAGTCAGTTTGGTCACAATCAAATCAAAGCAAAAGCAAATTCCAAGCAGCCAGCACACGCACGCCGTAGCCTCTTCTAGGCTCCATGTGCCTCCACTCCACTGCTGCTGCTTTCTTAGTGGCCATCCCATTGTACTGAGATCTCCAAAACGGTTGGCTCTCCGGCTGCACTTTCACCGATAGCCTCAATAGGCTGTCTTTCTGTGCCAAGCCTCAGTGTCTTTTTCACTCCTTCATTCCTGGGTCTTCAACTGCTATTGAGGCTGCACCTTCACTAGCGGCCCTTCCTGGCCTCTTACAGTTCTAAGCCTCAGCTGTTCTCCACAGCCCCTCATGCCTTCAAAAGCAGTACCATGTGGATGACTCTCGCACTACCCAGCTTGGTTGCCGGGTCAAGGTACTTAGTTGTCTGTGGAGCACAGCTTCTGTGTGCTGACTCTCAGGAAACATTTTCCAGAAGATTTCACCTCAGCAATGCTTATTTCTTCTTAATTACTGCTAAATTCACAGCTCCAGCCGACCAACATTGAGTAGTTCAGCAAAGCAAAGTTTTGTTTTAGAAGTTCTGGTGTCTTGTTAATCACAGCTGATTCTTCAGCTTCAGCTAACCAGAATGACAGAATCTTGAAATAGCCAGTGGCCCTGATAGTCTTTATACTCCTCCTGAAACTTCACAAGCCAAGCCTCCATCTTCTGCACTGTTTTCAACATTTTTATCTTCCAAGCTCCTACAGAACATCCCACTAAATTCTTAACCCTCAATGGCTCTTCTAGCCTAAAGTTTCAAAGTTCTTCCACAGTTCTTCCAAAACCATGGTCAGATCTGTTACAGCAACATCATACACTCTTGGTACCTACTTGTCTTAATTAGGGTCTCTGTTGCTGCAGCAAAACACCATGATCAAATAGCAAGTTGGAGAGAAAAGGGTTTATTCTGCCTACACTTCCATATTGCTGTTCATTATTGAAGGAAGTCAGAACAGGAACTCAAACAGGGAAGACTCCTGGAATCAGGAGCTGATGTAGAAGCTATGGATGTGCGGCTTATTGACTTGCTTCACGTGGCTTGCTTAGCCTACTTTTTATAGAATGCAGGACCACCATCAGGGGGTGGCACCACCCACAATGGGCTAGGCCCTCCCCTATTGGTCACTAACAGAAAATACCTTACGGCTGGATCTCATGGAGACATTTCCTCAACTGAGGTTCCTTTCTCTCTGATGATTATAGTTTGTGTCAAACTGACACATAACCAACCAGTACACTACTGCTCAATGCTATTCTAAAGAGAAGTTATCTTTTTAATAGCTTCTGCCTTCATTTGATATTTGTTAGGTGTTTCTTTATGTCAAACAAGTATAACCAAACTGAATTTGGCCAGTTAACTATGAAAGGGCAGTTACATGCCACTCTGATCTTGTCAGTTACTCATGGATGTTGATAGAGCATAATGTTGGCTCCTATATGCTTTGGCCAAAGTTCTGCCTTTCTATTGGTAAGATTCATGGCCCTCACCTTACATGGAGTACCATCACAAATTCTGACATTGCAGAATATGCCCTTCTGCATTTTTTGTATAATATGATGTGTGTCAGTAACTAAAGTTCAGTGGGATCTCACTGTATGGTAGGGCCTGTACTTCATGTGCTAAGTAACAATGCATTCTGCCTTTTCCACCTTCCTCCATGACTATTCCTTGCCTCTGTTAGCTGCGTTTCCGGAGGCCTCAGTATAAGGGGCAGATTAAAGACAGTGTTGGTAGCAGTGGGAGGAGACAGAAGCCTGTAGAAGTGCATACTCAAGCGTGTTCATTGTGAACAACATTCTTCACTTCACACCAGGAGCATGGGAGACAACAAGCTTCCACCCAGAGTGTCTGTGTAAGGTCTTGACCCTCAAGAGAAAGTGTTCTCTTTGGGTGATGCATCTGTTGGAGCCGACGGCTCTTCGGGGGAGCAATGCCAGTGAAGTGTTAGTGCTGTTCTCCTGAATGTGCTTCCTCGAATTTTGGGTTGCTGTGAGTCTCTTGGAAGGATGTTGAGACATGATATTTTTATTTAG
Seq C2 exon
CCAGCGACAGAGACTCCCGAGGAGCCCTCCACCCAGTATCTCTACATCACCGAGGCTGAAGATGTTCAGGGGACACAAGCAGCTGTAGCTGCACTTCAGGACCTGCGATATACCTCCGAGAGTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000025140:ENSRNOT00000068291:13
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.217 A=NA C2=0.452
Domain overlap (PFAM):
C1:
PF138941=zf-C2H2_4=WD(100=82.8)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]