DreINT0177868 @ danRer10
Intron Retention
Gene
ENSDARG00000077987 | zfat
Description
zinc finger and AT hook domain containing [Source:ZFIN;Acc:ZDB-GENE-130204-2]
Coordinates
chr16:25440131-25441701:+
Coord C1 exon
chr16:25440131-25440255
Coord A exon
chr16:25440256-25441580
Coord C2 exon
chr16:25441581-25441701
Length
1325 bp
Sequences
Splice sites
5' ss Seq
GAGGCGAGT
5' ss Score
2.28
3' ss Seq
ATAATTGTTTGTCCCCCCAGGTA
3' ss Score
10.96
Exon sequences
Seq C1 exon
GTGGAGTGAAATGTCCTGTATGCAATTATGTTTATGGCACTAAATGGGAAATGAATCGACACCTGAAGAGCAAACATGGACTGAAGGTGGTGGAGACTGACAGTCTGGGTCTCAATCAGTGGGAG
Seq A exon
GCGAGTCTACATTATAATTGCATGTTAAATTCTGAACCAAAACGTTTAAGATCCAAAAATGTTATTAAGGTGTCTTATATTTGTTCCATATGAATAAGACAGTTTAAAGCCAAGTATTCTGAAGAGATGTGATCTCTTTATGTAATGCACAGGTTAAATTTAGGCTTTAATTTCTGTTTAAATGATAATTGACACAAAGCTGTTTACCTTAAAATGATACACTCCATATATGTGTGTTTACATGTGATAAAAGCCTAATTTATTTATCATTTTCTGCTTTTTTTTAAGTATTTGTATGGATTACATGTTAGTTGGCAGAAATAAAGCACCATTATACAGTAGAAAGTCATTAAAGTATAGTAGTATAAAGGAAGGAAATTTATGTACGTTTTTTTCCATGGTAAAATTTGAATAGGGGTATAAAAAAGCTGTTCCTAAAAATGTAAATGTTTTACCACTAAATATGTTTGCAGAATGTTAAAATGAAGTTTCATGATTTAAATGACAGATTTAAATCATGAAATTTAAATCTGTTTTTAGAGATCTGATTTTAAAAAATTCTGTTAAACATTGAAGCTGTATAAATAATAATTAGGTTTAGCAAAAATGATCAATGTCATTAACTAAAATATTCATATTATGTTCTAACTTATGAACCAGTGAATGACTCTATATTACCCTAAGTCAGGGATGTCAAACTCAATTCCTGGAGGGCCGCAGCCCTGCACAGTTTAGTTCCAACCCTAATTAAACACACCTGATCCAACTAATTGAGTCCTTCAGGCTTGTTTGAAACCTACAGGTAAGTGTGTTGGAGCAGGGTTGGAACTAAACTGTGCAGGACTGCGGCCCTCCAGGAATTGAGTTTGACATCCCTGCCCTAAGTCCTGACATATTCTTTATATTAGAATTAAAAACTAATAGACTTGCTTTATATACTATAATTTTGGGCCACACAGTGGTGCAGTGGGTAGCACATTCGCCTCACAGCAAGAAGGTTGCTGGTTTGAGCCTCGGCTGGGTCAGTTGGCGTTTCTGTGTGGAGTTTGCACGTTTTCCCTGTGTTGGCATGGGTTTCCTTCGGGTGCTCCGGTTTCCCCTACATGTCCAAAAACTTGCGTATTGGGTAAGCTAAATTGTCCATAGTGTATGTGTGTGTATGGATGTTTCCCAAGGATGGGTTGCAGCTGGAAGGGCATCCGCTGCGTTAAACATATGCTGGATAAGTTGGCAGTACATTCTGCTGTGGCGACCCCAGATTAATAAAGGGACTAAGCCAAAAAGAAAATGAATTAATGAATATATATAATTGTTTGTCCCCCCAG
Seq C2 exon
GTAGTGGAGTCAGTGGAGGAGCCGACTATGCAGTACCTGCATATAGCTGAGACTGAAGATCCACAAGGAACTGAGACGGCTGTATCAGCTCTGCAGGACCTGCGATTCAATACACAAAATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000077987:ENSDART00000156351:13
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.024 A=NA C2=0.537
Domain overlap (PFAM):
C1:
PF138941=zf-C2H2_4=WD(100=57.1)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGGAGTGAAATGTCCTGTATGCA
R:
CATTTTGTGTATTGAATCGCAGGTCC
Band lengths:
246-1571
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]