GgaINT0101923 @ galGal4
Intron Retention
Gene
ENSGALG00000016207 | ZFAT
Description
zinc finger and AT hook domain containing [Source:HGNC Symbol;Acc:HGNC:19899]
Coordinates
chr2:142139917-142141561:-
Coord C1 exon
chr2:142141443-142141561
Coord A exon
chr2:142140044-142141442
Coord C2 exon
chr2:142139917-142140043
Length
1399 bp
Sequences
Splice sites
5' ss Seq
GAGGTAAAG
5' ss Score
8.27
3' ss Seq
GGCTGGGTTTTGTTTTCAAGTTA
3' ss Score
4.9
Exon sequences
Seq C1 exon
GTGGTATTAAGTGTCCTGTTTGCAGCTTTGTATATGGTACAAAATGGGAATTCAACAGACATCTTAAGAACAAGCATGGAATGAAGCTTGTAGAACACGATGGGGAAGCAAAGTGGGAG
Seq A exon
GTAAAGCAAAGTTTTCATGGATTTGGCCCTAGGATTTCAGGAAGTTATGGAGAGAAAGTTAAGGATAAAAAGTATTCAAAAGTGTGTTCTCAACTCTATATAAGAACAGGAGGTCATGTGATCTCTCATCACCATTTTCAATGCACACACTCTTGTGGCTATTAATATTGACTGCTTGCATGACTAGTAACTGGATTAATAATGTACTAAGTGGTTATTTTTGTATAGAGAGGGCTCTAGTCCTCTGCTGCAGAAAGAATGAAAGTTTTAGCAAAAATACGTGGAACTAAAAAAAATATATACAAAAAAATATACATACAAAATATTCACTGATGTTAACTTGAAGGTGCCCAAAGATGTGAGGTTATATTGAACCAATGAAAGAAGCTTATGGCTTGGTCCAGACAATGTTTAAATAAAGAAAACTGAATTTATATGTTAATCAGCTAAATGTGACACTATTATTGAAGAGTAAGTCTTCCACTATTTAGTGTTGTATTCAAAGTATATAGGAGTCACAGCATCAATGATTAGGATCAAAGCTTAAAAAAATTTAACTTACGTCTAAGAAGCCAAGTCAGGAAAAAAACGAAACAAAGTCAAAACACCACCTAGATTTTCTCAGTGGGTGGGGTAGTGCAGATGCCTTAAGCAGCTGTAACTTCTTAATCTTTTCTCTGCTGTAACGTGGGAAGTGATTTGTTTTAAAATGAAGACTGTTACTTTAATGAAAAAAAAAATTGAATGTAGATGTAGAGGCTATGGCAAAACCACAGAACCATCCAGTCACTTCTATTAAAAAATCACAGTTAGCAAGCTGAGTTTCCACTGCCTGATTAGTTCATTGATGGTGTCCAGTGATAGGAAAAAAACAAAAGTCAGTTGCAGTGGGTGAGACAGTTTCAGATTTCAGGCAGTCCAGCCCTAAGCATCAGTCTGATGCCTGATTTAGAAGTCTGTCCTGCAGTTCATGCTCAGCAGTATGCATGGATAGAGCGTAAAATCCTCAAAAACTATCACAGTAGGTTCTGTGTAGACAGTTATTCAAAGGAGAAAGGGCATGTATTTTAAAATGTAGTCCTTTGAAGTATTATTTCCATATGGATTTCACAAACCATACTGTATCCACCCTCCTTGATGAAAACATGAAAAAGTAAGAGGACACCCAGAATTCAAGGAAATCTCTGTCACTGGAACAACAGTGAAGAAAAAAGTCCCATCAGAGCAAAAGTACATGTTAACAGCCTCTTTTGAAAATCATAGTTGTGGGAAAGATAATTTCTATAACTCTTGTTTATTGTCCAGAACTCATTATTTTAAACTCATAACTTTGATTGTTCTCTAATTTGCTTAAATGAGAGGGAGATTATCCATGCATTGGCTGGGTTTTGTTTTCAAG
Seq C2 exon
TTAACTGCTGAAGTTTCTGAAGAAGCGTCTACTCAGTATGTCCATATCACAGAGGCTGGAGAAGATGATCAGGGTACTCAGGCTGCTGTAGCTGCATTACAGAACCTTAGATACACGTCTGAAAATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000016207:ENSGALT00000026126:13
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.100 A=NA C2=0.570
Domain overlap (PFAM):
C1:
PF138941=zf-C2H2_4=WD(100=60.0)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGGTATTAAGTGTCCTGTTTGCA
R:
CATTTTCAGACGTGTATCTAAGGTT
Band lengths:
246-1645
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]