MmuINT0178429 @ mm9
Intron Retention
Gene
ENSMUSG00000022335 | Zfat
Description
zinc finger and AT hook domain containing [Source:MGI Symbol;Acc:MGI:2681865]
Coordinates
chr15:67936518-67942124:-
Coord C1 exon
chr15:67942006-67942124
Coord A exon
chr15:67936642-67942005
Coord C2 exon
chr15:67936518-67936641
Length
5364 bp
Sequences
Splice sites
5' ss Seq
GAGGTAACA
5' ss Score
8.1
3' ss Seq
GACATGATGTTTTTATTTAGCCA
3' ss Score
4.56
Exon sequences
Seq C1 exon
GTGGTCTGAAGTGTCCTGTTTGCAGCTTTGTGTATGGAACCAAATGGGAGTTCAACAGACACTTGAAGAACAAACATGGCTTGAAGGTAGTGGAGATTGATGGAGACCCCAAATGGGAG
Seq A exon
GTAACACTTTAAGTGTGGTATGAGCTTGACATGTGGAAACACAGGTGACAAGTCAGGTGAGCCCAGGTGCTGGGCACAGTCAGCCCTCAAGATCATTACATGTGTTTCTTGGAAATCCTCGGCAGCCATTTCAGATCATGGCTCCCGGTCCCTCTGAGTGACATCTGAGCCACCAATGTGAATTTATTCCGGGTTGAACTTAGACATTTCTGTGAATGTTGTCTTGGCTTCTCCAGCCCACAAACCCTGTCTTAGATGTTAGTTACACCCAGCAGAGTTAAAGGCAAGTGGTCTGTTGCTATCCTCACAGAGAGAATTGGAAGGAGCCCTATTTCCTGGTTCCAGGTCCTTCCCACTAGCTGTTTCCCCTAGGAACTTGAATCTGTCGCCATTATGAGTACCAGCAGCCACCCATCTTCAAGTACCAGATGCCACTACAATGGGCAGATTGCAGTCATTCTAGGCGGGGCTTCTTAGACTCAGTACTATTGGTGGGTTTTTTTGTTTGTTTGCTTTTTTAAAGTTTTTTTTATTAGATATTTTCTTTATTTACATTTCAACTGTTATCCTCCCCTTTCCTGAATCCCCTTTGAAGGCCCCCTATTCTCTTCCCCCTCCCCGACTCCCAATTCCCTGTTCTCGAATTCCCCTACACTGGGGCATTGAGCCTTCACAGGACCAAGGGCTTCTCCTCCCATTGATGTCTGACAAGGCCAACCTCTGTAGCAGATATGTGGCTGGAGCGTGAGTCCCTCCATGGCTCTTTCGTTGGTGGTTTAGTCTCTGATAGCTCTGGGGGTACTGGTTGTTTCGTGTTTTGATCTGCATGATTCTTTGTTGTGAGAGGACTATTCTGGACTTTATAGGAAGCTTAGCTACATATCTAGCCTTTTCCTACCAGGTACGTCTAGCATCACCCTGCCTCTCTGGACCTCACTGAGACAATTACAGTTGTTTCCAGACACTGCCAAGGTTCACCACTCTCTGGCAATCACAGACACCTCCAGCTGATAGTGGATTTAGAGAGTACCTGGCTATAACCAGTCAGGAGTAAGGTCTTTGAAACAATTCATAGCACACAAAAATAATGAAACACCATGACTGTGCGGAGCTTACTTTGCGGTGTTCGGAAAGCATGTCTCTATGGAAGAACTGTATATGTTGATATAGCTCACCATGAACCGGGGGGAGAAATGGAACAGTCATCTTCATAGATGCCAAAAGGCTGGTGACAGACAGCGTCGTTCACCTATTACACACTTTCAGTAGACTGTAGTGGGTGCTCCTTAAGAGGACGAAAGTGTGTGTTTTGGCCATAAGCCAGTGTCTTGCTTCATTTGGAAGCACTAGAGGGTTTTCACTAAAGTCAGAAGCAAGTAACTATGGAAACAGTGTGTTGCTGGATACTCTAGGGCCAAAGTCAGAGAGCCGATGAGTGCTGCAGTCTACCCAGAGTGTCTGCTACAGTACTATGCTTAATCTCTGAAACTCTTTATTGTGTATTTTATAATTGAGCGAAGTTCTCATGAGAATGCTCTGTATATAAACGGAACTGTGTTTTCACCATTTGAAGATTTTACAATAAGCAGAGGCCAAAGCTACATGGAGCCTTAGTGCCAACTTGGAATCAAAGAACTCGGAACTCATGTGGTTTACTGTTATTATTTGCCATCGTCTACATGTTGCAAATCCCTAATTAAAACAAAACAAAACAAAACAAAACAAAATTCAGAATCCACAATGCTGTAAACTCCAAAAGCTTTTGAATATCAATGTCACCTCACTAGTGGAAAATTCCACATCTCCCCTCACTTGAAATACTTGTGGAAGAAACAATGAATCTGATTTACTTCAGAGCTATCAGGGGTGGAGACACAGCAAGACAGCACAATGTGTGATTCATTCCCTGTGCCTGCCTGGTGGCCTGGGCTTGACCCCTGGGAACCCATATACTATGGAGGTAAAGAACCAACTCCATATAGTTGTCCTCTGACCTCAAACTGTGGGTGTGGCATGCGCCCAGGCACTCCCTCACACATCCAAGAGCCTGTCACGGAGGATGTGGGACCATGGGCGAGACCACTGATTGGGACTTGATAATTGTGTCCATCAGGTGATGTGTGACCAGTATGTGGAAGTTTGTCATTCCTCTCTCTTTACTTCTATATGTATTTTATAAATTAAGACTAACAGGTTAGGTTAGGGGTGACAGACTTTAAACTTGTCTGTGTTATCTATAAGCTGTTTGACCTTGAGCCCTTGGTGACTCAGTTTACCCTTAGTGTTGTCAACCGTGTAGTGGGCTGGTAGATTGGAAAGCTGACAGGGAGAATCCTGTAACATGCTGGAGTTCCTGTGTGACAGACAAGCCCTCTGTACTGTCGGTGTTGATCGCAGGCTCAGTGTCACATTACCATAAACGGTGCCACAATCATTTCGCAGAACTCTTAAGTTCATGCTACAGAATTTGTTGTCTGTTAAAGAAACAGACATAGGGATACTAATTCATGATGGAAAGCTTGCTAAGTCAGGCCCCTCCAGCCGATTCTAGAACTATTAGTAGGGCTTTAACCCTCACAAAACAGTACACACAAAAATAAGCACTTGCCTCTCGAAGTGAGGCAGCTAAACATCAAGGAAGCTGGACACAGTGGGATGACACACTGGCTGCCTGGCACTTTGGATTGTCACTTATCTCCTAAGAATGCCTTACAGAGAGCACCACTCTTACTGAATGTTATCATTACCTGAGTCCCCCAAAAGGAGAGCAGCTCTTTCATAAGCTAAGGCACTGGCATCCAGAATTGGATAGTATATTACTTGTCTTAGTCAGGGTTTCTATAGCTGCAACAAAACACCACGGATAAAAAGCAAGTTGTGGAGGAAAGGGTTTATTCTGCTTATACCTCCATATTGCTGTTCATCACCAAAAGATGTCAGGACAGGAACTTGAACTGGGCAGGAACCTAGAGAAGGTGTAAAGAATGGAGAGGTGCTACTTCCTGGCCTTCTTCACATGGCTTGCTCACCATCTTAGGGATATCACCATGATCTCACATTAAAAACATAAATAACTAAAAGTCCTACATTCTTTACAAAGCTGGATACATTAAAATGCCAGTTCCTTTAAAATAGCCAACCTCTTTTAAAATACACAGTCTTTTAAAATTCCGTCTCTCGGCTGTGGGTTCCAGCAAGATGCTTTATTATTTCAAGAGGGAAGAGTCAGCGTCGTCACAATCAAGTCAAAGCATAAGCAAGTTCCAACCAGCCAATGTCTGGGATCCACTCATGATCTCCTGGACTCCTCCAAAGGGCTTGGATCACTTCTCAAGCTCTGCCCTCTGCAACACACACACAGCCTGTCTTTTAGGCTCCATCTGGCTCCACTCCACTGCTGCTGCTGTTCTTAGTGGTCATCCCATGGTACTGGCATCTCCAAAACTATTGGCACCTGGGCAGCACCGTCACCAATAACCTCAATAGGCTCTCTTCATGGTGCCTAGCCTCACTTCACTTTATGGCCCCTTCACTCCTGGGCCTTCAACTGCTATTGAGGTTGCACCTTCACTAGTGGCCCCTCCTGGCCTCTCACCGTGCCAAGCCTCAGTTGCTCTTCATAGTCCCTCAAACCAGTACCTTCAGAACCAGTGCCATGTGATGACTCTTACTCTGTCAAGTTTGGTTGCCAACTCAAGGTCCAACCACTTAGTTGCCTCTGGATCACAGCTTGTGTGTGTTGACTCTCAGGAAACATTTTCCAGAAGATTTCACCTCAGTGATGCTGGCCTCATCTTAATTACTGCGAAATTCACAGCTCCGGCCAACCAGCCTTGAGTATCCCAGTAAAGCAAAGTTTTGTTTTAGAAGTTCTGGTGTCGTGTTAGTCCCACCTGATTCTTTAGTCCCAGCTAAACCATACTGACAGAGTTCTAGCTCAAAGTTTCAAAGCTCAAAGTTTCAAAGTTCTTCCACAGTTCTTCCAAAACCATGGTGAGGTCTGGTACAGCAACATCATACAATCTTGGCACCAACTTGTCTTAATTAGGGTTTCTATTGCTGTAACGAAACACCATGATCAAAAAGCAAGTTGGAGAGGAAAGGATTTATTTAGCTTACACATTTACATTGCTGTTCATTATTTAAGAAAGTCAGGACAGGAGCTCAAACATGGCAGGATCCTGTAGTCAGGAGCTGATGCGGAAGTCATGGGTGCTGCTTACTGAATTGCTTCACATGGCTTGCTCATCCTACATTTTTATAGAACTCAGGACCACCACCAAGCAATGGCACCACCCACAATGGGCTAGGCTCTTCCCCCCTCCCCTCCATCGATCACTGAGAAAATGCCTTACAGCTGGATCTCATGGAGACATTTCCTCAACTAAGGCTCCTTTCTCTCTGATGACAATAATTTGTATCAAGTTGACATACAACAAGCCAGTACGTTGCTTAATGCTATTCTAAAGAGAAATGATCTTTCTAATAGTTTCTGCATTCATTTGATATTTATTGGGTGATTTCTTTATGTCAAGCAAGTATAGCTGAACTGGCTGACTGACCAAAAGGACAGTTACATGCTACTCTGGAACTCTGGTCAGTTACTCACAGGCATCAATAGAGCATAATGTTGGCTCCTATACACTTTGTCCAAAGTGCTGCCTTTTGTTTTTTATTGGTGAGATTCATAGCCCTCACCTTACAGGATTGGTTGTGTTTCTTCTCAGAAAGAGATCTATTAATATTGTTCCTGTGACTATCTACTTTCCTTGCTTCTCTCCTTGTGGTATAAGATATCTTTGAGTGACACTTGGGCCCCTCCTGCCATCACACATCCTGACATTGCAGAATATGTCCTTCCATATCCTTTGTATAGCAATTTGATGCATGTCAGTAGCTAAGGTTCAGTAAGACCTCACTGTATGGTAGGGCCTGTGCTTTAGTGCTAAGTAACAATGCATTCTTCCTTTCCCATTTTCCTCCATGACTGTTCCTTTCCTTTGTTAGCTTTGTGGCTGGAGGCCTCAGTGTAAGAGGCACATTACAAACAGTGTTGGTAGCAGTGGGAGGAGAGAGAAGCCTGTAGAAAAACATACTCAAGTGTGTTCATTGAGAGCAGCATGCTTCACTTTTTACCATGAGCATGGGGAGCAACAAGCTTCTCCACACAGTGGCCATAAGGTCTTGACCCTCAAGAGGAAATGTTATCTTTGGGCAATGCATCTGTTAGAGCAGATAGCTCTTGGGGGAGCTATGCCAGTGAAGTGTTAAATGCCACTCTCCTGTATGGGATTCTCTCATCCTGGAATTTTCGGTTGCTGTTAATCTCTTGGAAGGATGCTGAGACATGATGTTTTTATTTAG
Seq C2 exon
CCAGCAGCAGAGACTCCCGAGGAGCCCTCCACCCAGTATCTCTACATCACTGAAGCTGAAGATGTTCAGGGGACACAAGCAGCTGTGGCTGCACTTCAGGACCTGAGATATACCTCCGAGAGTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000022335-Zfat:NM_001145888:13
Average complexity
IR-C
Mappability confidence:
NA
Protein Impact
No protein impact description available
No structure available
Features
Disorder rate (Iupred):
C1=0.159 A=NA C2=0.452
Domain overlap (PFAM):
C1:
PF138941=zf-C2H2_4=WD(100=60.0)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: