HsaINT0185393 @ hg19
Intron Retention
Gene
ENSG00000066827 | ZFAT
Description
zinc finger and AT hook domain containing [Source:HGNC Symbol;Acc:19899]
Coordinates
chr8:135524718-135533244:-
Coord C1 exon
chr8:135533126-135533244
Coord A exon
chr8:135524845-135533125
Coord C2 exon
chr8:135524718-135524844
Length
8281 bp
Sequences
Splice sites
5' ss Seq
GAGGTAATT
5' ss Score
8.88
3' ss Seq
GGTACTATGTTTTTATTTAGACA
3' ss Score
4.01
Exon sequences
Seq C1 exon
GTGGTTTGAAGTGTCCTGTTTGCAGCTTTGTATATGGCACCAAATGGGAGTTCAATAGGCACTTGAAGAACAAACATGGCTTGAAGGTGGTGGAAATTGATGGAGACCCCAAGTGGGAG
Seq A exon
GTAATTTTTTTAAGTATGGTATTAATCTTGACATTTCAAAACACAGATGACAAACCAGGCAAACCCAAATACTGGGCACGGACAATCATTCCTCAGAACATTAGATTTTCTGTTTGGGGAACTTCTGAAACGTTTTCAAATGATGTCTCGCGTCTGAGGGGTATAACTGGGTTAAGATCTGGGCCAAGCCTGTGAATTCTTATTCTGGGTTGAATTTAGACTCTCTTGTGAAAGTTTGTGTTGACCTCCTTGACACTTTTACTTATGTTATTCACAAATCCAGAGTTTCAGATGTTGCATCTGAAAGAATGGAAGGCAAGGATTCTATTGTATTGCCATCCTCACCGAGAGAATTGGAAAAGGCTCTGTTTCCTGAATCTAGGCCCTGCTCTCTTTCTGTGGAGAGCTCATGCTCCTAGCTGCTTTTTTGTTTTTTTTCCCTTAGGAGTTGGAACCAGTCACCTGCTGAAAACACGCCTTTATTATAAGAGCCAGTAACCATCTCTCTTTTCAGATACTAGGTATTGCCACCACGGACTAATTGCAGTTATCTAAGGCAGGGTTTCTCAGACTCAGCACTGTCGACATTTTGATCTGGACAATCCTTTGTTGTGGAGGGCTGTCCTGTGCCCTACAGGCTGTTTAGCTGCATTTCTGGCCTCTTCCCACTAAGTTACTAGTAGCATCATCCCCCCAACCCCATCCCCTGTTGAGATACCCAAAAATGTCTCCAGACATTACCAATGTTCAGTGTTTCCTGGGGGTAAAAATCACCCTCACTTTATCTAAGGACTTTACAGAGCATCCAGTGGTTGGGAGAAGGCTTTTTAAACAGAATCCACAACATATGAAAAAAATAATACATCATGACATTGTGGGGATTATTCTGGAATGCAAGGCACAAGTGGTCTCTTGGAAAGGTAACATGTTAACATCCATTATAATATGAAACAGTCACCTTCATAGATGCAGAAAAGACATTTGACAAAATTCAGTGTTCACTGATGAAAAAGAGTAAATAGAATTTGATGGATACATCCTTAAGATAAAAAAAAAAATGTGTGTCATCCAAACACCAGCATCTTACTTCACTGGGAAACACTAGAGTGTTTCCACAGAAGTCAGAAGCAGACAAGAGTGCCCGGTGGCTCTGCTGTTCTTTAACAGCATGTGGAGGCATCAGTGAGTGTGGCTAGACCAGACAAAGCAGATGGAGACCTAGAACTGGAAGGAAAGAAATAAAAAGTATCTCTCTATACATATAATAGGATGATATTTTCAGAAAATCCAAAAGAATGAATGAAAAGCTAATACAAACAAAAAGCAGCAGATTAAAATATCAACATACAACAGTTAGTTGTAGATACATGTACACCTGCACATATGAATGTGTATACACATATGTGTAAATATAAGAATATGTATATGCTAATATATGCACACATATATACATACATAAAATCAGTTACAATGGAAACAAAACCCCCATTTGATACAGGAAACAAAACCAAGATAAATCTAGGCATAAACCTTATAAAAAATGCCCAAAATGTAAATATGGGAGACTATAAAACACTTCTGAAAGAGACATAAACCTAGAGTTGAGGAAATTAATGGGAATACTCAATATCATAAAGATGTTAATTCCCCTGAAAGTAATTTATACAATAATTTATCAAGGTAATATGATCTATTACATATTACATGTAATCTAAATACCATTAGATTTTTTCTGGAGCTAATCAAGTTGATTTCTAAAGTTCATTTGGAAGAGTAAGTACAATTAACTAGGAAACCCTTGGGAATAACAACCATAAGAGGAGAATCCTACCAGATATTAAAACATATTATGAAATCTCTCTAAGTGTGCATGAACAGATGGTTTAATGGAATCGAACAGAAAATTTAGAATAGACCCAATGACATATGGAAATTTAGTATATGATAAAGATGGTGTCTCAAGTTGGTAGGAGAAAGGTGGGCTTTTTGATAAGTGACACAGGATAGCTAAATAGCTATCTGAAAAAAGATAAAATTGAATCTGTTTACTATAACATATAAAGTTATATGAGAAAAATTTCAAAAGGATCAGATATTTAAATATAGAAACAGTAATATTTTACAAATACTAGAAGAAAGCATAATTGAATTCATCTATAAACTGAGAGCTCATAAATAAGTAAAAAGATAAATGATAAAAATATTTTTTTATATAGAAAAAATTAATATCTTTATAAAAGGCCTATAAAAATAGTGATGAGAAAGATCAACCCTTTAGAAAAATGGACAAGAGATAAGAAAGGTTCAGGGAAAAGAAAATGTAAATAACATCGAATATCTGAAAACATGATCAGCCTCACATGTAAGGAAAGAAATTTTCATTAAAATTAGCCCTGGATGGAATTTCTCACCTACTAGCTTGACAGAGATCCAAAAGTTTGACATTATCTCTGCTGGAAAAGCTGTGGGGAAATCTGCTCTCATACGTTGCTGGTGGGAATGTAAAATGGCCCAGCCTTATGAAGAGAATAGCAATATGTAACAAAATTACATTTGCATTTCTTTATCCATTAATTCAATAATCCAACTGTTAGGAAACCATCCCAAAGTTTCACTGGGACACTGTGTCCATACTGACATAAATAAATGATTGAATAAATAAATGTGGGAGAAGGAACTATGCATTTCCTCCAAAAAATAATGATTAATAAATGTAGAAGGAATGAGGGAAATAGAAAGTTACTATTAGAATACCACAGGAACAATCATAGCAGATGAGATCCGTTAATGAGTGCTAAAGTTAGTAGGCAAAAGTTTAAGGAGAAATGAGATATTCACATAAACTCTGAATATCTCCTTCCAAATATTTGTTAATTACAGAAGGCAAAAATAGGAACTTTATGGTGGAGGTACCACCTTCACCAAGCAGTAGAGGTTGGCATCATCAGTAATGAAGCATGCTGACATCATGTGTGACCTGATACCATGTGATCAGATGAGAAGACACTTCATCTCATGGTATTCTTAACTGAAATCTTCAACCTCAGCCTAATTATCAGAAACCATTGGACAAATCCAAATGATGGGTGTGGTCAAATACCTCATCTGTACTCCTCAAAAGCGTCAAGGTCATGAAAGATATGGAAAGTCTGAGGAACTTTCACAGCCAGGAGGAGACAACGGAGGCATGATGGCTAAATGTGCTGTGGGATGCAGAATTGGATCCTGAAACAGAGAAAGAACATTAATGAGAAAACCGGAGGAATCTGGAGAAAGCCTATTGTTTAATTAGTAATAGTATCCAAATGTTAATTTCTTGTTTTGATCATTGCGCCATGATTACGAAAGATGTTAAGATTAGGGGAGGCTGGGTAAAGGGTCTCCAGGAACTCTCTGTTGCAGCACTTTACATCTTTGGAAGTCTTGTGTAAGTCTAAAATTATTTTCAAAGTAAAGCAGTTACAAAAGATAAGAAATGGGGTCATTATATGTAGGGAAAGGAGACAGAGAGCAAGATGGAAGGGATGGGGAGAAGCTAAATTTCTCAAAATACCCTGCTGTGTAGATTTGACTCTGATTATATATAAAATATTGTAAAAGTATTTTATATAATAATAACAAAATTAAACTTAAAAAGCAAGTCTTAAACATTGTGAGTAAAATGAAATAAATTATTCTAACTGTATATCAAATTGGTGACTACGTGGAGAGGAACAATTTCAAGAGACTTCAAAACAGTTATTTGATTGGGATGTAACCTAAGGGCAAAACAAACTGCAAAAACTGCAGTTATCAAGTATTGTTGGTAGTAAGGACAATATTGTGATTCTGAGGCTGTTACTAGTGTTTAATAATGACAGCGAAACACATAAAATATGTTTAATTCTGTAAGTTTATAATGATATTTGGAAAAAACAATTCAGTCACCTTTGTAGAATGTTAGAGAATCAACTCTTTATTTTGAAAATTGGTAAATTAAGACCAAGAATCAAGCCATTGTTCTACCTTTATTTTTTAGTTTTTTTTGAGAGATAGGGTCTGGCTACCCAGGCCGGCATGCCATGGAGCCTCCCTTCATAGCTCACTGCAACCTGGAACTCCTGGGCTCAAGCAATTCTCTTACCTCAGGAGACAGTAGATAGTCCTATCTACTATCTTCCAAGTAGATAGGATTATAGGCAAGCACTATAATTTTTTGAAATTTTTTAAAAATAGAGACAGGATTTCTCTTTGTTGCCTAGGCTGGTCTCAAACTCCTGGCCTCAAGCAATCTTCCCACCCTGGCTTCCCGAAGTGCTGGGAATACAAGTGTGAGCCACCATACCCAGCCCTATTCTACCTTTAAAAACAAAACAAAACAGAACAAAACAAAACCCTATGTAAACATAACCAAACATTCGATGAGGGGAAGTTTTTTCTTTTGAAATATTTCAACTAACACATGAAAAATTAGAATATTACCATGTTGCAACCTTCTAATGATGTCATGGGTTTAGCAATGATCATCAGTTACTGCTAACATTACATAAAAGAGACCACCATCCAAAGCGTGTCTCCTGAAAGAACTGCCCAATATAACCCATGAAGCATTCTTTGCAAAAAGGAATCTGAATCTAATTAAGCTTTTGTATTTGTATCCAGTGACCAATTTACAGAAAACACCATGGATGGAGGAACATTGGTCAATTCCATGGTGATGCAATCAGCGAAACTTAGATTGCTGACAGCTCTCTAAGGCAAACACCCTGCTGTCTTCAACAAATAAACTACAAGGGGAGAAAAGCCAGAAATGGAGGGAGAGCATATGGATTTTAAGTCTTATGAGACATATTAATCAGTTCTAATGTGTGAACCTCATTTAGATTTGATTTGAACAAACCTAAAAAGTGAGGTAATTGGGGAAATTTAAACATTGTCTAGACCATTGATGATGTTAAGGATTTATTGTAAAGTTTTTGAGTGTGACAGGAGCATTGTAGTTCTTTTTTGGATGAGTTTTATTTTTTAGAGAGACAGTATGAAATATTTATGGGGCAAATAATGATTTCAGGATTTGCTTCAGAATAATCCTGGGGCAGGGCATGGAGTACATGGAAACATAGTCCAAGAAAGTCTGGCCATGATTCAACCTACAGAATGGGAGAAAATTTTTGCAATCTATCCATCTGACAAAGGGCTAATATCCAGAATCTACAAGGAACTTAAACAAATTTACAAGAAAAAAACAACCCCATCAAAAAGTGGGCAAAGAATATGAACAGATACTTCTCAAAAGAAGACATTTATGCAGCCAACAAACATATGAAAAAAAGCTCATCATCACTGGCCATCAGAGAAATGCAAATCAAAACCACAATGAGATACCATCTCACGCCAGTTAGAATGGTGATCATTAAAAAGTCAGGAAACAACAGATGGTGGAGAGGATGTGGAGAAATAGGAATGCTTTTACACTGTTGGTGGGAATGTAAATTAGTTTGCCCGTCGTGGAAGACGGTGTGGTGATTCCTCAAGGATCTAGAACCAGAAATACCATTTGACCCAGCAATCCCATTACTGGGCATATACCCAAAGGATTATAAATCATTCTACTATAAGGACACATGCACACACGTATGTTTATTGCAGCACTATTCACAATAGCAAAGACTTGGAACCAACCCAAATGCCCATCAATGATAGACTGCATAAAGAAAATTCAGTACACATACACCATGGAATACTATGCAGCCATAAAAAAGATGAGTTCATGTCCTTTGCAGGCACATGGATGAAGCTGAAAACCATCATTCTCAGCAAACTAACACAGGAACAGAAAACCAAACACTACATGTTCTCACTCATAAATGGGAGTTGAACAATGAGAACACATGGACACAGGGAGGGGAACGTCACACACCAGGGCCTGTTGGGGGTGGAGGGCTAGGGGAGGGATAGCATTAGGAGAAATACCTAATGTAGATGACGAGTTGATGGGTGCAGCAAACCACCATGGCACGTGTATACTTATGTAACAAACCTGCATGTTCTGCACATGTACCCCAGAACTTAGAGTATAATTAAAAAAGGAAAGACTTGCCATGATTGATAATTGCTGAAGTTGGTTAATGGACACATGGAGGTTTATTAGACCCGTCTCTCTGCTCTTGTGTATTGAAAATTTTTTTATAAACATTCTTTTAAAAAGTAAGAGTTTTGGAGTCTGACAGACTTAACTTTGAATCCTCTGTCACCTATAAACTGCTTGCCCTTGAGCCATTTTTTAACCCTCATGGCTCAGTGTTCTGCTCTGTACAGTAGGCTGATAATCCCTGAGAGCTCAGAAGCACTGAGAGAAACCATTTGTAAAATGCTGAGGCCTGAATGAGCCCCTGGAGGCCCTCAAAAATGGCAGCTGCTATGATTATTGCGGATGTTGATGATGATCACTTTTACATCTTCATCTATGCAAAAACAATTAGTCACCTAGTGTTTCAAGTATTAGTACATACTGGAAGAATTTACTCTTCATTAACAAAATAGACACTCGAGTGTCAATTACTGATGTAAAACTCAATCTATCTTGTCAGTCGGTGCTTTTATAAAAGCATGCAGTAAAGCCTCGCTTCCAGCTGATGCTAGCACTTTATGCAGAGCCGTGAACCCAACAGAAATAGTTGACATAAGACTGGGTAGTTGACTCCATACTCATCTCCATGAGATGGTGAACAGCCAGGAAGCTGCCATGAAGTGGTCACCAGTGGAGTAACAAGCCACCTCTTCCAGCAATGTGTGTGTCACCTGGCTCCCAGGAATGCCTTGCAACGAGTACCAGCCTTCCTGACAGCAACTATGACATGCTTTCCCCAGAATGAGGAGGAACCTTTCAGGTTGCATCCTGTCCTTTCACGGGCTCAGGCATTGCCTGGATCTACTGTCGGCTAATCTGTTGCCTCATGGTACTGAGAACAAAATGTTCTTCTTTTTGTTCATTTATGCATTCATTGAATATTTTTTGGGTGACTACTATATGTCAGGATGGAAACACCTAAATGGACTTGGCCAGTTGGCTGTGAAGGAATATTATATGCTATTCTGAACCTCTATGTCATTTACTGATATATGCTTATAGAGCATAACTTGGCACCTGTAGATTTTGTCTGAAGTCCTTCTTTTTGTTCTTCTTGATTGGTGACATTCATGCATCCAGCCTTACAGTTTTGCTTGCACTCTCTGCCCCTTCCAGAAAGAGATAATTATTAACATCTAGTTCTGTAAAAATTCTGTTCCACCTCTTCTCTCTTTGAGGCACGAGGTACCTGTGAATGCCACTTTAACTCCTCCTACCCTCGCAAGTCCTGATTTTGTGCAAATATATTTCTTGTAGTCAGTTTTATTTCTTACACTTTCATGTTCGAATAAGAATGGCACAGCCGAGCGTGGTGGCTCACACCTGTAATCCCAACACTTTGGGAGGCTCAGGAGATCGAGACCATCCTGGCCAACATGGTGAAACTAAAAATACTAAAAATACAAAAATTAGCTAGGTGTGGTGGTGCGTGCCTGTAATCCCAGGCACTCGGGAGGCTGAGGCAGGAGAATCGCTTGAACCTGGCGGGCAGAGATTGCAGTGAGCTGAGATCGCGCCACCGCGCTCCAGCCTGGGTGACAGAGCGAGACTCTGTCTCAAAAAAAAAAAAAAAAAAGCACAAATAGCTAAGATTTTCTGAACTCTTACTCTGCTGGGACCTGGGACCTGTGCTCTCCACGTGCTGTGTAATCACAGGTCCTCTCCCTTCCACCATCAGCTGCCCTGTGGCTGTGCCCCTTCCTCTGTGTAATCACCCACCCTACCCCTTCCACCGTCAGCTGCCCCATGGCTGTGCCCCTTCCTCTGTTGGCCACATGGCACCCAGTCCCCAGGGTAAGGCACAGATTAGAAGTGATGTTGGTAGCAGTGGGAGGAAACAGAGGAGCCGTTAGAATCTAAGTGTATGCAAGAATATCTGAACTGGTCAAATCTCTAATTGTGAACAGCATACATACTCTGTTTCCCACCACAAAAATGTACAGCAGGGGCTTTTTACCAAAGCTAGTTTTTAAAGGTCTTGATCCTCACAGAGAAATTTTCTCTTTGAGAAGTGTATGGGAGCAACTGGTTTCTCAGGGGTGCCAGGTAAATGAGATGTTGCAATGTATTGCTTTCTTATATGCGTTTGTTCTATCTTAGTATGTTATCTTGGAACTTCTGGGCAACAGTCAATCTTTTAGGAGATGACTTAGGTACTATGTTTTTATTTAG
Seq C2 exon
ACAGCAACAGAAGCTCCTGAGGAGCCCTCCACCCAGTATCTCCACATCACAGAGGCCGAAGAAGACGTTCAAGGGACACAGGCAGCGGTGGCCGCGCTCCAGGACCTGAGATACACCTCTGAGAGTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000066827-ZFAT:NM_001029939:14
Average complexity
IR-C
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.147 A=NA C2=0.591
Domain overlap (PFAM):
C1:
PF138941=zf-C2H2_4=WD(100=60.0)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)