MmuINT1035456 @ mm10
Intron Retention
Gene
ENSMUSG00000022335 | Zfat
Description
zinc finger and AT hook domain containing [Source:MGI Symbol;Acc:MGI:2681865]
Coordinates
chr15:68104956-68110562:-
Coord C1 exon
chr15:68110477-68110562
Coord A exon
chr15:68105080-68110476
Coord C2 exon
chr15:68104956-68105079
Length
5397 bp
Sequences
Splice sites
5' ss Seq
AAGGTAGTG
5' ss Score
5.56
3' ss Seq
GACATGATGTTTTTATTTAGCCA
3' ss Score
4.56
Exon sequences
Seq C1 exon
GTGGTCTGAAGTGTCCTGTTTGCAGCTTTGTGTATGGAACCAAATGGGAGTTCAACAGACACTTGAAGAACAAACATGGCTTGAAG
Seq A exon
GTAGTGGAGATTGATGGAGACCCCAAATGGGAGGTAACACTTTAAGTGTGGTATGAGCTTGACATGTGGAAACACAGGTGACAAGTCAGGTGAGCCCAGGTGCTGGGCACAGTCAGCCCTCAAGATCATTACATGTGTTTCTTGGAAATCCTCGGCAGCCATTTCAGATCATGGCTCCCGGTCCCTCTGAGTGACATCTGAGCCACCAATGTGAATTTATTCCGGGTTGAACTTAGACATTTCTGTGAATGTTGTCTTGGCTTCTCCAGCCCACAAACCCTGTCTTAGATGTTAGTTACACCCAGCAGAGTTAAAGGCAAGTGGTCTGTTGCTATCCTCACAGAGAGAATTGGAAGGAGCCCTATTTCCTGGTTCCAGGTCCTTCCCACTAGCTGTTTCCCCTAGGAACTTGAATCTGTCGCCATTATGAGTACCAGCAGCCACCCATCTTCAAGTACCAGATGCCACTACAATGGGCAGATTGCAGTCATTCTAGGCGGGGCTTCTTAGACTCAGTACTATTGGTGGGTTTTTTTGTTTGTTTGCTTTTTTAAAGTTTTTTTTATTAGATATTTTCTTTATTTACATTTCAACTGTTATCCTCCCCTTTCCTGAATCCCCTTTGAAGGCCCCCTATTCTCTTCCCCCTCCCCGACTCCCAATTCCCTGTTCTCGAATTCCCCTACACTGGGGCATTGAGCCTTCACAGGACCAAGGGCTTCTCCTCCCATTGATGTCTGACAAGGCCAACCTCTGTAGCAGATATGTGGCTGGAGCGTGAGTCCCTCCATGGCTCTTTCGTTGGTGGTTTAGTCTCTGATAGCTCTGGGGGTACTGGTTGTTTCGTGTTTTGATCTGCATGATTCTTTGTTGTGAGAGGACTATTCTGGACTTTATAGGAAGCTTAGCTACATATCTAGCCTTTTCCTACCAGGTACGTCTAGCATCACCCTGCCTCTCTGGACCTCACTGAGACAATTACAGTTGTTTCCAGACACTGCCAAGGTTCACCACTCTCTGGCAATCACAGACACCTCCAGCTGATAGTGGATTTAGAGAGTACCTGGCTATAACCAGTCAGGAGTAAGGTCTTTGAAACAATTCATAGCACACAAAAATAATGAAACACCATGACTGTGCGGAGCTTACTTTGCGGTGTTCGGAAAGCATGTCTCTATGGAAGAACTGTATATGTTGATATAGCTCACCATGAACCGGGGGGAGAAATGGAACAGTCATCTTCATAGATGCCAAAAGGCTGGTGACAGACAGCGTCGTTCACCTATTACACACTTTCAGTAGACTGTAGTGGGTGCTCCTTAAGAGGACGAAAGTGTGTGTTTTGGCCATAAGCCAGTGTCTTGCTTCATTTGGAAGCACTAGAGGGTTTTCACTAAAGTCAGAAGCAAGTAACTATGGAAACAGTGTGTTGCTGGATACTCTAGGGCCAAAGTCAGAGAGCCGATGAGTGCTGCAGTCTACCCAGAGTGTCTGCTACAGTACTATGCTTAATCTCTGAAACTCTTTATTGTGTATTTTATAATTGAGCGAAGTTCTCATGAGAATGCTCTGTATATAAACGGAACTGTGTTTTCACCATTTGAAGATTTTACAATAAGCAGAGGCCAAAGCTACATGGAGCCTTAGTGCCAACTTGGAATCAAAGAACTCGGAACTCATGTGGTTTACTGTTATTATTTGCCATCGTCTACATGTTGCAAATCCCTAATTAAAACAAAACAAAACAAAACAAAACAAAATTCAGAATCCACAATGCTGTAAACTCCAAAAGCTTTTGAATATCAATGTCACCTCACTAGTGGAAAATTCCACATCTCCCCTCACTTGAAATACTTGTGGAAGAAACAATGAATCTGATTTACTTCAGAGCTATCAGGGGTGGAGACACAGCAAGACAGCACAATGTGTGATTCATTCCCTGTGCCTGCCTGGTGGCCTGGGCTTGACCCCTGGGAACCCATATACTATGGAGGTAAAGAACCAACTCCATATAGTTGTCCTCTGACCTCAAACTGTGGGTGTGGCATGCGCCCAGGCACTCCCTCACACATCCAAGAGCCTGTCACGGAGGATGTGGGACCATGGGCGAGACCACTGATTGGGACTTGATAATTGTGTCCATCAGGTGATGTGTGACCAGTATGTGGAAGTTTGTCATTCCTCTCTCTTTACTTCTATATGTATTTTATAAATTAAGACTAACAGGTTAGGTTAGGGGTGACAGACTTTAAACTTGTCTGTGTTATCTATAAGCTGTTTGACCTTGAGCCCTTGGTGACTCAGTTTACCCTTAGTGTTGTCAACCGTGTAGTGGGCTGGTAGATTGGAAAGCTGACAGGGAGAATCCTGTAACATGCTGGAGTTCCTGTGTGACAGACAAGCCCTCTGTACTGTCGGTGTTGATCGCAGGCTCAGTGTCACATTACCATAAACGGTGCCACAATCATTTCGCAGAACTCTTAAGTTCATGCTACAGAATTTGTTGTCTGTTAAAGAAACAGACATAGGGATACTAATTCATGATGGAAAGCTTGCTAAGTCAGGCCCCTCCAGCCGATTCTAGAACTATTAGTAGGGCTTTAACCCTCACAAAACAGTACACACAAAAATAAGCACTTGCCTCTCGAAGTGAGGCAGCTAAACATCAAGGAAGCTGGACACAGTGGGATGACACACTGGCTGCCTGGCACTTTGGATTGTCACTTATCTCCTAAGAATGCCTTACAGAGAGCACCACTCTTACTGAATGTTATCATTACCTGAGTCCCCCAAAAGGAGAGCAGCTCTTTCATAAGCTAAGGCACTGGCATCCAGAATTGGATAGTATATTACTTGTCTTAGTCAGGGTTTCTATAGCTGCAACAAAACACCACGGATAAAAAGCAAGTTGTGGAGGAAAGGGTTTATTCTGCTTATACCTCCATATTGCTGTTCATCACCAAAAGATGTCAGGACAGGAACTTGAACTGGGCAGGAACCTAGAGAAGGTGTAAAGAATGGAGAGGTGCTACTTCCTGGCCTTCTTCACATGGCTTGCTCACCATCTTAGGGATATCACCATGATCTCACATTAAAAACATAAATAACTAAAAGTCCTACATTCTTTACAAAGCTGGATACATTAAAATGCCAGTTCCTTTAAAATAGCCAACCTCTTTTAAAATACACAGTCTTTTAAAATTCCGTCTCTCGGCTGTGGGTTCCAGCAAGATGCTTTATTATTTCAAGAGGGAAGAGTCAGCGTCGTCACAATCAAGTCAAAGCATAAGCAAGTTCCAACCAGCCAATGTCTGGGATCCACTCATGATCTCCTGGACTCCTCCAAAGGGCTTGGATCACTTCTCAAGCTCTGCCCTCTGCAACACACACACAGCCTGTCTTTTAGGCTCCATCTGGCTCCACTCCACTGCTGCTGCTGTTCTTAGTGGTCATCCCATGGTACTGGCATCTCCAAAACTATTGGCACCTGGGCAGCACCGTCACCAATAACCTCAATAGGCTCTCTTCATGGTGCCTAGCCTCACTTCACTTTATGGCCCCTTCACTCCTGGGCCTTCAACTGCTATTGAGGTTGCACCTTCACTAGTGGCCCCTCCTGGCCTCTCACCGTGCCAAGCCTCAGTTGCTCTTCATAGTCCCTCAAACCAGTACCTTCAGAACCAGTGCCATGTGATGACTCTTACTCTGTCAAGTTTGGTTGCCAACTCAAGGTCCAACCACTTAGTTGCCTCTGGATCACAGCTTGTGTGTGTTGACTCTCAGGAAACATTTTCCAGAAGATTTCACCTCAGTGATGCTGGCCTCATCTTAATTACTGCGAAATTCACAGCTCCGGCCAACCAGCCTTGAGTATCCCAGTAAAGCAAAGTTTTGTTTTAGAAGTTCTGGTGTCGTGTTAGTCCCACCTGATTCTTTAGTCCCAGCTAAACCATACTGACAGAGTTCTAGCTCAAAGTTTCAAAGCTCAAAGTTTCAAAGTTCTTCCACAGTTCTTCCAAAACCATGGTGAGGTCTGGTACAGCAACATCATACAATCTTGGCACCAACTTGTCTTAATTAGGGTTTCTATTGCTGTAACGAAACACCATGATCAAAAAGCAAGTTGGAGAGGAAAGGATTTATTTAGCTTACACATTTACATTGCTGTTCATTATTTAAGAAAGTCAGGACAGGAGCTCAAACATGGCAGGATCCTGTAGTCAGGAGCTGATGCGGAAGTCATGGGTGCTGCTTACTGAATTGCTTCACATGGCTTGCTCATCCTACATTTTTATAGAACTCAGGACCACCACCAAGCAATGGCACCACCCACAATGGGCTAGGCTCTTCCCCCCTCCCCTCCATCGATCACTGAGAAAATGCCTTACAGCTGGATCTCATGGAGACATTTCCTCAACTAAGGCTCCTTTCTCTCTGATGACAATAATTTGTATCAAGTTGACATACAACAAGCCAGTACGTTGCTTAATGCTATTCTAAAGAGAAATGATCTTTCTAATAGTTTCTGCATTCATTTGATATTTATTGGGTGATTTCTTTATGTCAAGCAAGTATAGCTGAACTGGCTGACTGACCAAAAGGACAGTTACATGCTACTCTGGAACTCTGGTCAGTTACTCACAGGCATCAATAGAGCATAATGTTGGCTCCTATACACTTTGTCCAAAGTGCTGCCTTTTGTTTTTTATTGGTGAGATTCATAGCCCTCACCTTACAGGATTGGTTGTGTTTCTTCTCAGAAAGAGATCTATTAATATTGTTCCTGTGACTATCTACTTTCCTTGCTTCTCTCCTTGTGGTATAAGATATCTTTGAGTGACACTTGGGCCCCTCCTGCCATCACACATCCTGACATTGCAGAATATGTCCTTCCATATCCTTTGTATAGCAATTTGATGCATGTCAGTAGCTAAGGTTCAGTAAGACCTCACTGTATGGTAGGGCCTGTGCTTTAGTGCTAAGTAACAATGCATTCTTCCTTTCCCATTTTCCTCCATGACTGTTCCTTTCCTTTGTTAGCTTTGTGGCTGGAGGCCTCAGTGTAAGAGGCACATTACAAACAGTGTTGGTAGCAGTGGGAGGAGAGAGAAGCCTGTAGAAAAACATACTCAAGTGTGTTCATTGAGAGCAGCATGCTTCACTTTTTACCATGAGCATGGGGAGCAACAAGCTTCTCCACACAGTGGCCATAAGGTCTTGACCCTCAAGAGGAAATGTTATCTTTGGGCAATGCATCTGTTAGAGCAGATAGCTCTTGGGGGAGCTATGCCAGTGAAGTGTTAAATGCCACTCTCCTGTATGGGATTCTCTCATCCTGGAATTTTCGGTTGCTGTTAATCTCTTGGAAGGATGCTGAGACATGATGTTTTTATTTAG
Seq C2 exon
CCAGCAGCAGAGACTCCCGAGGAGCCCTCCACCCAGTATCTCTACATCACTGAAGCTGAAGATGTTCAGGGGACACAAGCAGCTGTGGCTGCACTTCAGGACCTGAGATATACCTCCGAGAGTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000022335:ENSMUST00000162054:13
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.154 A=NA C2=0.381
Domain overlap (PFAM):
C1:
PF138941=zf-C2H2_4=WD(100=82.8)
A:
NA
C2:
NO
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types