BtaALTD0024711-3/3 @ bosTau6
Alternative 5'ss
Gene
ENSBTAG00000005572 | ZNF205
Description
Bos taurus zinc finger protein 205 (ZNF205), mRNA. [Source:RefSeq mRNA;Acc:NM_001034473]
Coordinates
chr25:2556695-2557613:+
Coord C1 exon
chr25:2556695-2556795
Coord A exon
chr25:2556796-2557043
Coord C2 exon
chr25:2557472-2557613
Length
248 bp
Sequences
Splice sites
5' ss Seq
CAGGTGGGA
5' ss Score
6.71
3' ss Seq
ATTTCCTTCTGCTCCTCCAGGCT
3' ss Score
9.79
Exon sequences
Seq C1 exon
GGTCTCCACCCGGCTCCTTGCGCCCGGTGCAGGCTGCGGAGACTCCCTTCCCCAGGGGCGGGGGCTCCGCCGCCCGTAGCGCCCCCTCCGCCTCCACGTCG
Seq A exon
GTGAGAGCGGGGCTGGGAGGGCGCCTGGATCCCGAGAGCCGCGAGGGTGGCCGGCTGGCAGGAAGGGCCGGGGTCAAAGGTGGAAGGCTACGGGCTGGCGGGGAGAGGAGGAGGCCTGGACCGGGTTCGGAGAGAGGAAGGACATCATTCGTGCGGGACCGTGAGCAGCATGGACGCCCGGCCCGGGCGGGTGGTTGCAGCCGCAGGGAGGGCTGCTGACAGCGGGCGGCTCAATTTCGGGATCCCAG
Seq C2 exon
GCTCCTGGCCAGAAGCTGGAGGGGGCTTGGCCAACACAAGCACAAAACGACTCAACGGTGCTTTCTGGCTCTGAGATAAAAAAAAATGTCTGCAGACGACGGAGGCATCCGGGCTGCCCAGGACAAGGAGAGAGCCCGAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000005572-2-0,3-0,4-0-3/3
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.632
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Mouse
(mm10)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCTCCACCCGGCTCCTTG
R:
CTCTCGGGCTCTCTCCTTGTC
Band lengths:
241-489
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development