BtaINT0165026 @ bosTau6
Intron Retention
Gene
ENSBTAG00000005572 | ZNF205
Description
Bos taurus zinc finger protein 205 (ZNF205), mRNA. [Source:RefSeq mRNA;Acc:NM_001034473]
Coordinates
chr25:2556670-2557613:+
Coord C1 exon
chr25:2556670-2557043
Coord A exon
chr25:2557044-2557471
Coord C2 exon
chr25:2557472-2557613
Length
428 bp
Sequences
Splice sites
5' ss Seq
CAGGTGGGA
5' ss Score
6.71
3' ss Seq
ATTTCCTTCTGCTCCTCCAGGCT
3' ss Score
9.79
Exon sequences
Seq C1 exon
GGGACTTCCTGTCGTCCCTAATCCCGGTCTCCACCCGGCTCCTTGCGCCCGGTGCAGGCTGCGGAGACTCCCTTCCCCAGGGGCGGGGGCTCCGCCGCCCGTAGCGCCCCCTCCGCCTCCACGTCGGTGAGAGCGGGGCTGGGAGGGCGCCTGGATCCCGAGAGCCGCGAGGGTGGCCGGCTGGCAGGAAGGGCCGGGGTCAAAGGTGGAAGGCTACGGGCTGGCGGGGAGAGGAGGAGGCCTGGACCGGGTTCGGAGAGAGGAAGGACATCATTCGTGCGGGACCGTGAGCAGCATGGACGCCCGGCCCGGGCGGGTGGTTGCAGCCGCAGGGAGGGCTGCTGACAGCGGGCGGCTCAATTTCGGGATCCCAG
Seq A exon
GTGGGACCGAGTCAGGTCGAGGGCAGGGTGTGTGTGTGTGTGTCCGGGGCCGGGAGACTCCGGAGCCTCGATTCCTCCGCCGAGCTGGCTGCGGCGGGCGGGGCCCCACTCAGCACCTGTTTGGTAGCATCTCTGCAGATCTTTACGCTCTTCGTGACGGGAGATACAGATTCCAAATTCCCCCAGCTTTCCCTAACCCAGCTGCTCTGAGATTCGGAGTTGTTGCTTCAGCGATAAAGGGGATCACAGAAAACAGCATTCAGTCAGAGCGAGGAACCAAAAACAGTTTAGAGAGGGAGGCCGTTGGAGGGCGTCCGGGAGGCTTTACGTCCGATTGGGGCCAAGGATGGGTCTGGTCCCGCGTGGGGATTTCGGGGCTTTCAGGGGGTGTCCAGGGGACGCTGGCTGATTTCCTTCTGCTCCTCCAG
Seq C2 exon
GCTCCTGGCCAGAAGCTGGAGGGGGCTTGGCCAACACAAGCACAAAACGACTCAACGGTGCTTTCTGGCTCTGAGATAAAAAAAAATGTCTGCAGACGACGGAGGCATCCGGGCTGCCCAGGACAAGGAGAGAGCCCGAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000005572:ENSBTAT00000007323:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.632
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGAGACTCCCTTCCCCAGG
R:
TTTGTGCTTGTGTTGGCCAAG
Band lengths:
358-786
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]