HsaINT0186427 @ hg19
Intron Retention
Gene
ENSG00000122386 | ZNF205
Description
zinc finger protein 205 [Source:HGNC Symbol;Acc:12996]
Coordinates
chr16:3162563-3163488:+
Coord C1 exon
chr16:3162563-3162683
Coord A exon
chr16:3162684-3163349
Coord C2 exon
chr16:3163350-3163488
Length
666 bp
Sequences
Splice sites
5' ss Seq
CCGGTGAGA
5' ss Score
8.72
3' ss Seq
GTTTCTGTCTGCTCTTCTAGGCT
3' ss Score
10.44
Exon sequences
Seq C1 exon
CTGTCTTCCCTACTCCCAGTCTCCACCCAACTCCCCCGCCCGCCCCGTGCAGGCTGTGGAGACTCCCTTCCCGGGGGAGGGGGCCCCCACTGCCGCAGGTGCCCCCTCTGCCTCCACCCCG
Seq A exon
GTGAGAAGGGGGTGCTGGGGAGGGCATCTGGATCCCGAGACCGGCGCAGATGATCAGCTTGCAGGAGGGGATGGGGTCAAAGGTGGAAGGCTTCAAGCTGGCAGGAGAGAAGGGGGCCAGGACCGGGTTTGGGAAGGAGAAGGACATTGTCTGCCAGGACCGAGAGCAGGATGGGCATCCCAGGCCTGGGGCAGGTGGTTGCAGCTGCAGGGGGGCTGCTGAGAGCGGGCAGGTTGATTTCTGAATTCCTGGTGGGCATGGGAGTCAGGTAGGGACACACGGTGTATGTCCTGGGGTCGGGGGACAGCAGGTCCTGGATTACCCTGGCCTTGACGGGCGGGGCCCCACCAGCACCTGTTCTGCAGGATCTCTGCAGAACTTTCTGCTCCTGATGACAGGAAATAGCGATTCCAATTTAGCCTCGGCTTTCCCTGAGCCGGTTACACTGAGATGCGAGGCTCTTGCTTCAGCAATAAAGGGGACAATACAAAATAGCATTCTTTCAAAAATAGGACCCAGAAAACATCACAGAGAGTGGGACCATCGGATAGGATCTGGGAGACTTTCTTTCCGATTGGGACCAGGGAGCGCTGGTACTCGTGGGGATTTTCAGGGCTCTTTGGGGGTGTCCAGGAAGCGAGGGCTGGTTTCTGTCTGCTCTTCTAG
Seq C2 exon
GCTCCTGGCCAGAAGCTGGAGGGGGCTTGGCCAAAAAGAGGGAGAAACAACTCAGCTGTTCTTTCTAGCTCTGAAATAGAAAATGTCTGCAGACGGCGGAGGCATCCAGGACACCCAGGACAAGGAGACACCCCCGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000122386-ZNF205:NM_003456:1
Average complexity
IR-C
Mappability confidence:
NA
Protein Impact
No protein impact description available
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=1.000
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTCTTCCCTACTCCCAGTCTCC
R:
GGGGGTGTCTCCTTGTCCTG
Band lengths:
254-920
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)