BtaALTD0024715-1/4 @ bosTau6
Alternative 5'ss
Gene
ENSBTAG00000020289 | ZNF214
Description
zinc finger protein 214 [Source:HGNC Symbol;Acc:HGNC:13006]
Coordinates
chr15:46368648-46371546:+
Coord C1 exon
chr15:46368648-46368748
Coord A exon
NA
Coord C2 exon
chr15:46369856-46371546
Length
0 bp
Sequences
Splice sites
5' ss Seq
CATGTTAGT
5' ss Score
-2.52
3' ss Seq
ATTATCTGCTTATATTTTAGGAA
3' ss Score
10.16
Exon sequences
Seq C1 exon
GATGTGACTGTTATTTTTACTTGGGAGGAGTGGAAATTCTTGGATTCTTCTCAGAAAAAGCTCTACAGAGAGGTCATGTGGGAGAATTACACAAATGTCAT
Seq A exon
NA
Seq C2 exon
GAAATTGGAAAGAGAGCTGCAAACCCCAGGAAGAAAGATTCAGATATTTAGACCATGAAAATCTTTCCTGCTGGCAAGGCTGGAAGACTGCCCGCACTCCAATATATGAAAATAAAAACTATGTGGAAATGGTTCAAGGTATAGATTCCAAAGCCCTAAAGCAGCAACACCTTTCTCACTACCAAGAATGGTCAACACTCCCCACACAAGTAGCAGGGTATGGGAACTATGAACTGACTTTTGAAAGCAAAAGTCCCAGGAACTTAAAATATACCAAGTGTATACCTTGTCAGTCCTTAGAAAGGAAACACTCTGAAGATGATGGTAGAAAAATCTATGTGAGTGATTCATGTGGTTTTCAAGGACTCAGATACCCTGTTGGCATATCCAGGAAAAATCTCTCTCTGGAGAAAGAACAGAAGCTCATACGTCAGCATTCTATCCCAGGACAGGAAGCCTTTCCAGAGTACATTGGGGAGATATGCCAAAATGACCTGCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000020289-1-1,2-1,3-1,4-1-1/4
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (No Ref, Alt. Stop)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.046
Domain overlap (PFAM):
C1:
PF0135222=KRAB=WD(100=75.9)
A:
NA
C2:
PF0135222=KRAB=PD(0.1=0.0),PF134651=zf-H2C2_2=WD(100=4.1),PF134651=zf-H2C2_2=WD(100=4.4),PF134651=zf-H2C2_2=WD(100=4.6),PF134651=zf-H2C2_2=WD(100=4.6),PF134651=zf-H2C2_2=WD(100=4.6),PF134651=zf-H2C2_2=WD(100=4.6),PF134651=zf-H2C2_2=WD(100=4.4),PF134651=zf-H2C2_2=WD(100=4.6),PF134651=zf-H2C2_2=WD(100=4.6),PF134651=zf-H2C2_2=WD(100=4.6)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm10)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGGAGGAGTGGAAATTCTTGG
R:
GGGTTTGCAGCTCTCTTTCCA
Band lengths:
106-110
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development