BtaINT0165052 @ bosTau6
Intron Retention
Gene
ENSBTAG00000020289 | ZNF214
Description
zinc finger protein 214 [Source:HGNC Symbol;Acc:HGNC:13006]
Coordinates
chr15:46368597-46371546:+
Coord C1 exon
chr15:46368597-46368756
Coord A exon
chr15:46368757-46369855
Coord C2 exon
chr15:46369856-46371546
Length
1099 bp
Sequences
Splice sites
5' ss Seq
TAGGTAAAG
5' ss Score
6.93
3' ss Seq
ATTATCTGCTTATATTTTAGGAA
3' ss Score
10.16
Exon sequences
Seq C1 exon
TTGCTTCTTCCTGGAAAGCTAATCTTCGACCAGATGGCAGTAACATTTGAAGATGTGACTGTTATTTTTACTTGGGAGGAGTGGAAATTCTTGGATTCTTCTCAGAAAAAGCTCTACAGAGAGGTCATGTGGGAGAATTACACAAATGTCATGTTAGTAG
Seq A exon
GTAAAGTTTTCCCAACTCTTAGGGAATAAGGTTAGTTTTTTTCTGGGACCTGTTTTGTTGAGTATTTTGGTTCTTTCTGATTGCTGTATTGAGGTAAAAGAGATTCTCAAAAATGGGTCTTAAATCACATGAAAAATAACAGATAAAGAAAACAAGTTATCTTCCAAAACATTTTAGCTATGTAATTAATAGGTGTCTGTGATTATTTGTGAATATTTTCTGGATTACACATAAAGCACAGATTTCCACCTATAATTTTGTGCAGTCCTAAATTTGTTCTCGCTTCATGTTCTATTTGTAGGAGTTAGCTTTTGCTATATAACAAACTACCCTAAATTTAGTAACTTAAAACTTTGTTATGTTTCATGATTCCAATTGGTTACATGGATCTTCTATCAGGAGTGACTTGATTGGGGCTAGATGGTCTAAAATAAGGCTGAATAGCCTGACTCACATGTCTGGCAGTTGGTCAGTATCAGTGTTATAATGGCCATGTGTTGACCATATGTCTCTCTTCAAGGAGGTCAGCCCAGGTTCATTTTGTGATCACAGGACTATCAAAACCAGCAAAAGAGACCAACCCCAACGTACAAGTACTTTACAGATTTCTGTTTGTCTCACTTTTGTCCCAGTGGCCAAAGCAAATTATAGAGTCAGTATGTAAGAGGAACACCCAAAAATGTAAATAAGCAGAGTTTTTTTTTTTAAACACAATCTACTACACTATTTTAGAGCAAAAAAGAGAAACAGGTATTTTATTTCTTATAATAATTTCCCAAATAGAGTAATCTAATTGAATCTCAGTCTTTAAGATGATTTCCATGCAGCCAATCACTTTCTTTTTTATTTCTAACAGTACTTGGTAAGTAGTAGATGCTCAAGGTATGTTTATTGAATGAATGAGTGAAATGAATACCTCTATGAATGAATAAACAAATGAATTTCACACCCAAATATGGAGCAGTCTAAGTCATAACCCTTCTTTCTCACTTGTGAGAAATTATATATTCCTATAATTCTGGGGCTTGTTGACTGAGATACTTGGAAATTTTTAAACATAGCTCTCATCTTACCACTGGATTATCTGCTTATATTTTAG
Seq C2 exon
GAAATTGGAAAGAGAGCTGCAAACCCCAGGAAGAAAGATTCAGATATTTAGACCATGAAAATCTTTCCTGCTGGCAAGGCTGGAAGACTGCCCGCACTCCAATATATGAAAATAAAAACTATGTGGAAATGGTTCAAGGTATAGATTCCAAAGCCCTAAAGCAGCAACACCTTTCTCACTACCAAGAATGGTCAACACTCCCCACACAAGTAGCAGGGTATGGGAACTATGAACTGACTTTTGAAAGCAAAAGTCCCAGGAACTTAAAATATACCAAGTGTATACCTTGTCAGTCCTTAGAAAGGAAACACTCTGAAGATGATGGTAGAAAAATCTATGTGAGTGATTCATGTGGTTTTCAAGGACTCAGATACCCTGTTGGCATATCCAGGAAAAATCTCTCTCTGGAGAAAGAACAGAAGCTCATACGTCAGCATTCTATCCCAGGACAGGAAGCCTTTCCAGAGTACATTGGGGAGATATGCCAAAATGACCTGCTGAAAGGCTCTATGGAAGAGAAATACTGTGGATGTAAAAAATGTAAAGAAATTTATTACTGGAACTCACAGTGTGTTCTCCACAAGAGAAATCAACTTGGAGAAAAGTTCTATCCATGCTCCATCAGCCCCACATGGTTCCCTCAGAGATCAGACCTATACAGACATCCAAGAATCCACACAGGTAAGCAGCTGTACAGATGTGACGAAGTTGCCAGTAACCTTAGTCAGAGCTTTGGTGTTCACTTTCATCAGAGAGCCCACCCAGGGGAGGCACCTTATGTATGTAACCTGTGTAGTAATAGCTTCAGTCAGATCCCCAGGCTTCACCATGATCAAAGAATCCACCTGGAAGAGAAACTCTATAAGTTGCAGTGTGATAAGGACCTCGGTAGAAATTCATTGCTTCACATTCACCAGAGACTTCACATAGGAGAGAAGCCTTTTAAGTGTGATCAGTGTGGTAAGAGTTTTAGTCGGAGTTCAGTACTTCATGTTCATCAGAGAGTCCACACCGGAGAGAAACCATATAAGCGTGATGAGTGTGGTAAAGGCTTCAGTCAGAGCTCAAATCTTCGAATTCATCAGTTAGTCCACACAGGAGAAAAGTCCTATAAATGTGGTGACTGTGGTAAGGGCTTTACCCAGCGGTCAAATCTTCAAATCCATCAGAGAGTGCATACAGGAGAGAAGCCATACAAATGTGACAACTGCGGGAAGGACTTTAGTCACAGCTCAGATCTTCGCATTCATCAGAGGGTCCATACGGGGGAGAAACCCTATATTTGTCATGAATGTGGGAAGGGCTTCAGCAAGAGTTCAAAACTTCACACTCATCAAAGAGTGCATACTGGAGAGAAACCCTATAAATGTGAACAGTGTGGTAAAGGGTTCAGTCAGCGTTCACATCTTCTCATTCATCAGAGAGTCCATACTGGAGAAAAACCCTATAGATGTGATGACTGTGGAAAGGGCTTTAGTCACAGCTCAAATCTTCATATTCACCAGAGGATCCACACAGGAGAGAAGCCTTATCAATGTGCTAAGTGTGGTAAGGGTTTCAGCCACAGCTCAGCTCTTCGAATTCATCAGAGAGTCCACACAGGAGAGAAAACTTATAAATGCCATGAGTATTACAAGGGGTTCAATCAGAATTCACATCTTTACAATAACTGCAGAAGAGAAACCTTGTAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000020289:ENSBTAT00000027039:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.046
Domain overlap (PFAM):
C1:
PF0135222=KRAB=WD(100=75.9)
A:
NA
C2:
PF0135222=KRAB=PD(0.1=0.0),PF134651=zf-H2C2_2=WD(100=4.1),PF134651=zf-H2C2_2=WD(100=4.4),PF134651=zf-H2C2_2=WD(100=4.6),PF134651=zf-H2C2_2=WD(100=4.6),PF134651=zf-H2C2_2=WD(100=4.6),PF134651=zf-H2C2_2=WD(100=4.6),PF134651=zf-H2C2_2=WD(100=4.4),PF134651=zf-H2C2_2=WD(100=4.6),PF134651=zf-H2C2_2=WD(100=4.6),PF134651=zf-H2C2_2=WD(100=4.6)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCTAATCTTCGACCAGATGGCA
R:
CTTGTGTGGGGAGTGTTGACC
Band lengths:
353-1452
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development