HsaINT0186458 @ hg38
Intron Retention
Gene
ENSG00000149050 | ZNF214
Description
zinc finger protein 214 [Source:HGNC Symbol;Acc:HGNC:13006]
Coordinates
chr11:6999318-7002855:-
Coord C1 exon
chr11:7002709-7002855
Coord A exon
chr11:7001556-7002708
Coord C2 exon
chr11:6999318-7001555
Length
1153 bp
Sequences
Splice sites
5' ss Seq
TAGGTAAAG
5' ss Score
6.93
3' ss Seq
TTATCTTTTTATTTTTCTAGAAA
3' ss Score
9.63
Exon sequences
Seq C1 exon
AAAGCCTGATCTTTGACCAGATGGCAGTAACATTTGAAGATGTGACTATTATTTTTACATGGGAGGAGTGGAAATTCCTGGATTCTTCTCAAAAAAGACTCTACAGGGAGGTCATGTGGGAGAACTACACAAATGTCATGTCAGTAG
Seq A exon
GTAAAGTTATCCCGTCTCATAGGGAATAGAGTTTCTTCTAGGAGCAGTTTTGTTGAGTATTTTGTTTTTTTATCTGGGTGTTATATTGAGGTGTTGGAAGAGATATTCTCAAAAATGTTTCTTAAATCATGTTACAAATAGAAGATAAAGCAAGACAGATTCCAGGACACCTAGGTTATATCATTAATAGATACTTGTGATTATTAGTTTTAGTTATTCTCTGCATTACCCTTAAAACACATATCTCCATATGTAGTCAATTTTGTGTGGTCCTAAATTTTTTCTCTCTTCATGCTATTTGTATAAGTTAGCTTTTGTTGTATAACATACTATGCCAGACTTAGTGGCTTAAAAACAAACTTTATTATTTTTTATGATTCTCATTGACTGGATGATCTTTTATCATGGAGGATTTGGTTGTGGTTGAATGGTCTAAGATTAAGCTGCCTGGCCTGACTCAAATGTGGGGCAGTCGGCTCAGTATCAGTGGAGGTAGTGGGAATGTGTTGGCCATATATCTCTCTTCAAACAAGCCAACCCAAGCACACTTACATGGTGGTGGTCACGGGATTTTCAAAAGCATCGAGAGAGGGCAAGGACTTTTCAAGTCTCTGCTTGTGTTACTTTTGTTATTTTCCCAGTTACCAACGCAAATTGTGTAGCCAAGCATAGAGAGAGTGTGGAAGGAGAACACCAAAGGTGTAGGTAAAGTAGTGAGTTAATGTAGTCATTTTTTCTCAATCTACCATGCTATTCTAGAACAGAAAAATAGGAACAATATATTTTGTTTCTTATAAGAGCATACAAAATGAAGTAATCTAATTAAATCTCAGTCTTTACGACTATTTCCATGAAGCAGTTGGCATTATTCTCATTTCTAACAGTGCGTGGTAAATAGAAGTTAAATCTTTCTAACAGTGCCTGCTCAAGATATGTTTGTGGAATGAATAAATAAGTGAATGAATGAATACATACATGAATGAACAAAATAAATGAATTTCAGACCCAAATGGAGCAGGCAGAGTCATAACCCTTCTTTCCTACCCCCAGCCACACATATATTCCTATCATTTAAAGGTCATTGATTTAGATAGTTGGAAATTTTTCAACACAGCTTTTATCTCACCATGGGATTATCTTTTTATTTTTCTAG
Seq C2 exon
AAAACTGGAATGAGAGCTACAAATCCCAAGAAGAAAAATTCAGATACTTAGAATATGAAAATTTTTCCTACTGGCAAGGCTGGTGGAATGCTGGCGCCCAGATGTATGAGAATCAGAACTATGGGGAAACTGTTCAAGGGACAGATTCCAAAGACCTCACACAGCAAGATCGTTCCCAGTGTCAGGAATGGTTAATACTCTCCACACAAGTACCAGGGTATGGGAACTATGAACTGACTTTTGAAAGCAAAAGTCTCAGGAACTTAAAATATAAAAATTTTATGCCTTGGCAGTCCTTAGAAACAAAAACCACTCAAGACTATGGTAGAGAAATCTACATGAGTGGTTCACATGGTTTTCAAGGGGGCAGATACCGTCTTGGCATATCCAGGAAAAACCTCTCCATGGAAAAAGAACAGAAGCTCATAGTTCAGCATTCTTATATCCCAGTGGAGGAAGCCCTTCCACAGTATGTTGGGGTGATATGTCAAGAAGACCTACTGAGAGATTCAATGGAAGAAAAGTACTGTGGATGTAATAAATGTAAAGGAATTTATTATTGGAACTCACGGTGTGTTTTCCACAAGAGAAATCAACCTGGAGAAAACCTCTGTCAATGCTCCATCTGTAAAGCATGCTTCTCTCAGAGATCAGACTTGTATAGACATCCAAGAAACCACATAGGTAAGAAGCTGTACGGATGTGATGAAGTTGACGGTAACTTTCATCAGAGCTCCGGAGTTCACTTTCATCAGAGAGTTCACATAGGGGAGGTACCTTATAGCTGTAATGCATGTGGTAAGAGCTTCAGCCAGATCTCTAGTCTTCACAATCATCAAAGAGTCCACACAGAAGAGAAATTCTATAAAATTGAGTGTGATAAAGACCTCAGTAGAAATTCATTACTTCACATTCACCAGAGACTTCACATAGGAGAGAAGCCTTTTAAATGTAATCAGTGTGGTAAGAGTTTTAATCGGAGTTCAGTACTTCATGTTCATCAGAGAGTCCACACAGGAGAAAAACCATATAAGTGTGATGAGTGTGGTAAGGGTTTCAGCCAGAGCTCAAATCTTCGAATTCATCAGTTAGTACACACAGGAGAGAAGTCTTATAAATGTGAAGACTGTGGTAAAGGCTTTACCCAGCGCTCAAATCTTCAAATTCATCAGAGAGTGCATACAGGAGAGAAACCTTATAAATGTGATGACTGTGGAAAGGACTTTAGTCACAGCTCAGATCTTCGCATTCATCAGAGAGTCCATACAGGGGAGAAACCCTATACTTGTCCTGAATGTGGGAAGGGCTTCAGTAAGAGTTCAAAGCTTCACACTCATCAAAGAGTACATACTGGAGAGAAACCCTACAAATGTGAAGAGTGTGGCAAGGGATTCAGTCAGCGTTCACATCTTCTCATTCATCAGAGAGTCCATACAGGAGAAAAGCCCTATAAATGTCATGATTGTGGAAAGGGTTTTAGTCACAGTTCTAATCTTCACATTCATCAGAGGGTCCATACAGGAGAGAAGCCTTATCAATGTGCTAAGTGTGGTAAAGGTTTCAGTCATAGCTCAGCTCTTCGAATTCATCAAAGAGTCCATGCAGGAGAGAAACCTTACAAATGCCGTGAATATTATAAGGGATTTGATCATAATTCACATCTTCACAATAATCATAGAAGAGGAAACTTATAAATATTGTTCATTTAGTTAACAGCTTTAATCAAAGTTTACCTAACCTTTAAACCCTATAAATCCTGCTGTTAAGGAAATCTTATAAATAACACAAGTAATCCCAAGCAACATTTATAGTTTCCCCTATCTCCCACTAAGAATTATTTGCTTCAAAAGGAGATCTTTAGAAAAAACCCTATATATTTAAAATTATAGTGTATTTTTCTTTACCTACTATAAATATAATACAGTCATAAATATATTAAACATTTAAGGAGAAAACTCTTCATTCTATTTCATTCTAGTCTTTTTTTCTGTGCATTTTAATGTGCATGAAATTGTGTGTTCAATTTTGTATTTTCACTGTCTTCAAAATATTTACTTAAATTTTGGTTTGAATTGAAACTGGTTGGCCAACTGTTAAACGACATCTCTTAACTCCCCTAAAAACTCCCTAGGAAGTAACAGAAAAGATGGAAACACATAGAACTTAAAACTCAGTTTTGGCCGGTAGAATTCAATTGTTTATGGACAAAAGCCACCTAATAAAAGATAGGAAAGCATT
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000149050:ENST00000278314:2
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.087
Domain overlap (PFAM):
C1:
PF0135222=KRAB=WD(100=95.3)
A:
NA
C2:
PF0135222=KRAB=PD(0.1=0.0),PF0009621=zf-C2H2=WD(100=4.1),PF134651=zf-H2C2_2=WD(100=4.4),PF134651=zf-H2C2_2=WD(100=4.6),PF134651=zf-H2C2_2=WD(100=4.6),PF134651=zf-H2C2_2=WD(100=4.6),PF134651=zf-H2C2_2=WD(100=4.6),PF134651=zf-H2C2_2=WD(100=4.4),PF134651=zf-H2C2_2=WD(100=4.6),PF134651=zf-H2C2_2=WD(100=4.6),PF134651=zf-H2C2_2=WD(100=4.6)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAGGGAGGTCATGTGGGAGAA
R:
TGTTTCTAAGGACTGCCAAGGC
Band lengths:
349-1502
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains