HsaINT0186458 @ hg19
Intron Retention
Gene
ENSG00000149050 | ZNF214
Description
zinc finger protein 214 [Source:HGNC Symbol;Acc:13006]
Coordinates
chr11:7020549-7024086:-
Coord C1 exon
chr11:7023940-7024086
Coord A exon
chr11:7022787-7023939
Coord C2 exon
chr11:7020549-7022786
Length
1153 bp
Sequences
Splice sites
5' ss Seq
TAGGTAAAG
5' ss Score
6.93
3' ss Seq
TTATCTTTTTATTTTTCTAGAAA
3' ss Score
9.63
Exon sequences
Seq C1 exon
AAAGCCTGATCTTTGACCAGATGGCAGTAACATTTGAAGATGTGACTATTATTTTTACATGGGAGGAGTGGAAATTCCTGGATTCTTCTCAAAAAAGACTCTACAGGGAGGTCATGTGGGAGAACTACACAAATGTCATGTCAGTAG
Seq A exon
GTAAAGTTATCCCGTCTCATAGGGAATAGAGTTTCTTCTAGGAGCAGTTTTGTTGAGTATTTTGTTTTTTTATCTGGGTGTTATATTGAGGTGTTGGAAGAGATATTCTCAAAAATGTTTCTTAAATCATGTTACAAATAGAAGATAAAGCAAGACAGATTCCAGGACACCTAGGTTATATCATTAATAGATACTTGTGATTATTAGTTTTAGTTATTCTCTGCATTACCCTTAAAACACATATCTCCATATGTAGTCAATTTTGTGTGGTCCTAAATTTTTTCTCTCTTCATGCTATTTGTATAAGTTAGCTTTTGTTGTATAACATACTATGCCAGACTTAGTGGCTTAAAAACAAACTTTATTATTTTTTATGATTCTCATTGACTGGATGATCTTTTATCATGGAGGATTTGGTTGTGGTTGAATGGTCTAAGATTAAGCTGCCTGGCCTGACTCAAATGTGGGGCAGTCGGCTCAGTATCAGTGGAGGTAGTGGGAATGTGTTGGCCATATATCTCTCTTCAAACAAGCCAACCCAAGCACACTTACATGGTGGTGGTCACGGGATTTTCAAAAGCATCGAGAGAGGGCAAGGACTTTTCAAGTCTCTGCTTGTGTTACTTTTGTTATTTTCCCAGTTACCAACGCAAATTGTGTAGCCAAGCATAGAGAGAGTGTGGAAGGAGAACACCAAAGGTGTAGGTAAAGTAGTGAGTTAATGTAGTCATTTTTTCTCAATCTACCATGCTATTCTAGAACAGAAAAATAGGAACAATATATTTTGTTTCTTATAAGAGCATACAAAATGAAGTAATCTAATTAAATCTCAGTCTTTACGACTATTTCCATGAAGCAGTTGGCATTATTCTCATTTCTAACAGTGCGTGGTAAATAGAAGTTAAATCTTTCTAACAGTGCCTGCTCAAGATATGTTTGTGGAATGAATAAATAAGTGAATGAATGAATACATACATGAATGAACAAAATAAATGAATTTCAGACCCAAATGGAGCAGGCAGAGTCATAACCCTTCTTTCCTACCCCCAGCCACACATATATTCCTATCATTTAAAGGTCATTGATTTAGATAGTTGGAAATTTTTCAACACAGCTTTTATCTCACCATGGGATTATCTTTTTATTTTTCTAG
Seq C2 exon
AAAACTGGAATGAGAGCTACAAATCCCAAGAAGAAAAATTCAGATACTTAGAATATGAAAATTTTTCCTACTGGCAAGGCTGGTGGAATGCTGGCGCCCAGATGTATGAGAATCAGAACTATGGGGAAACTGTTCAAGGGACAGATTCCAAAGACCTCACACAGCAAGATCGTTCCCAGTGTCAGGAATGGTTAATACTCTCCACACAAGTACCAGGGTATGGGAACTATGAACTGACTTTTGAAAGCAAAAGTCTCAGGAACTTAAAATATAAAAATTTTATGCCTTGGCAGTCCTTAGAAACAAAAACCACTCAAGACTATGGTAGAGAAATCTACATGAGTGGTTCACATGGTTTTCAAGGGGGCAGATACCGTCTTGGCATATCCAGGAAAAACCTCTCCATGGAAAAAGAACAGAAGCTCATAGTTCAGCATTCTTATATCCCAGTGGAGGAAGCCCTTCCACAGTATGTTGGGGTGATATGTCAAGAAGACCTACTGAGAGATTCAATGGAAGAAAAGTACTGTGGATGTAATAAATGTAAAGGAATTTATTATTGGAACTCACGGTGTGTTTTCCACAAGAGAAATCAACCTGGAGAAAACCTCTGTCAATGCTCCATCTGTAAAGCATGCTTCTCTCAGAGATCAGACTTGTATAGACATCCAAGAAACCACATAGGTAAGAAGCTGTACGGATGTGATGAAGTTGACGGTAACTTTCATCAGAGCTCCGGAGTTCACTTTCATCAGAGAGTTCACATAGGGGAGGTACCTTATAGCTGTAATGCATGTGGTAAGAGCTTCAGCCAGATCTCTAGTCTTCACAATCATCAAAGAGTCCACACAGAAGAGAAATTCTATAAAATTGAGTGTGATAAAGACCTCAGTAGAAATTCATTACTTCACATTCACCAGAGACTTCACATAGGAGAGAAGCCTTTTAAATGTAATCAGTGTGGTAAGAGTTTTAATCGGAGTTCAGTACTTCATGTTCATCAGAGAGTCCACACAGGAGAAAAACCATATAAGTGTGATGAGTGTGGTAAGGGTTTCAGCCAGAGCTCAAATCTTCGAATTCATCAGTTAGTACACACAGGAGAGAAGTCTTATAAATGTGAAGACTGTGGTAAAGGCTTTACCCAGCGCTCAAATCTTCAAATTCATCAGAGAGTGCATACAGGAGAGAAACCTTATAAATGTGATGACTGTGGAAAGGACTTTAGTCACAGCTCAGATCTTCGCATTCATCAGAGAGTCCATACAGGGGAGAAACCCTATACTTGTCCTGAATGTGGGAAGGGCTTCAGTAAGAGTTCAAAGCTTCACACTCATCAAAGAGTACATACTGGAGAGAAACCCTACAAATGTGAAGAGTGTGGCAAGGGATTCAGTCAGCGTTCACATCTTCTCATTCATCAGAGAGTCCATACAGGAGAAAAGCCCTATAAATGTCATGATTGTGGAAAGGGTTTTAGTCACAGTTCTAATCTTCACATTCATCAGAGGGTCCATACAGGAGAGAAGCCTTATCAATGTGCTAAGTGTGGTAAAGGTTTCAGTCATAGCTCAGCTCTTCGAATTCATCAAAGAGTCCATGCAGGAGAGAAACCTTACAAATGCCGTGAATATTATAAGGGATTTGATCATAATTCACATCTTCACAATAATCATAGAAGAGGAAACTTATAAATATTGTTCATTTAGTTAACAGCTTTAATCAAAGTTTACCTAACCTTTAAACCCTATAAATCCTGCTGTTAAGGAAATCTTATAAATAACACAAGTAATCCCAAGCAACATTTATAGTTTCCCCTATCTCCCACTAAGAATTATTTGCTTCAAAAGGAGATCTTTAGAAAAAACCCTATATATTTAAAATTATAGTGTATTTTTCTTTACCTACTATAAATATAATACAGTCATAAATATATTAAACATTTAAGGAGAAAACTCTTCATTCTATTTCATTCTAGTCTTTTTTTCTGTGCATTTTAATGTGCATGAAATTGTGTGTTCAATTTTGTATTTTCACTGTCTTCAAAATATTTACTTAAATTTTGGTTTGAATTGAAACTGGTTGGCCAACTGTTAAACGACATCTCTTAACTCCCCTAAAAACTCCCTAGGAAGTAACAGAAAAGATGGAAACACATAGAACTTAAAACTCAGTTTTGGCCGGTAGAATTCAATTGTTTATGGACAAAAGCCACCTAATAAAAGATAGGAAAGCATT
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000149050-ZNF214:NM_013249:2
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.087
Domain overlap (PFAM):
C1:
PF0135222=KRAB=WD(100=95.3)
A:
NA
C2:
PF0135222=KRAB=PD(0.1=0.0),PF0009621=zf-C2H2=WD(100=4.1),PF134651=zf-H2C2_2=WD(100=4.4),PF134651=zf-H2C2_2=WD(100=4.6),PF134651=zf-H2C2_2=WD(100=4.6),PF134651=zf-H2C2_2=WD(100=4.6),PF097235=Zn-ribbon_8=WD(100=8.3),PF134651=zf-H2C2_2=WD(100=4.6),PF134651=zf-H2C2_2=WD(100=4.4),PF134651=zf-H2C2_2=WD(100=4.6),PF134651=zf-H2C2_2=WD(100=4.6),PF134651=zf-H2C2_2=WD(100=4.6)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Mouse
(mm10)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAGGGAGGTCATGTGGGAGAA
R:
TGTTTCTAAGGACTGCCAAGGC
Band lengths:
349-1502
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)