MmuINT0179631 @ mm9
Intron Retention
Gene
ENSMUSG00000022987 | Zfp641
Description
zinc finger protein 641 [Source:MGI Symbol;Acc:MGI:2442788]
Coordinates
chr15:98120909-98121731:-
Coord C1 exon
chr15:98121602-98121731
Coord A exon
chr15:98121023-98121601
Coord C2 exon
chr15:98120909-98121022
Length
579 bp
Sequences
Splice sites
5' ss Seq
TGAGTAAGC
5' ss Score
5.78
3' ss Seq
TGTCCTTTTCTCCTGGACAGGGT
3' ss Score
10.19
Exon sequences
Seq C1 exon
GGCCTAGTAACTATCAAGGATGTGTCCTTGTGCTTCTCTCAGGAGGAGTGGCGGAGCCTGGACCCCTCGCAGACAGACTTTTACGGAGAATATGTCATGCAGGAAAACTGTGGGATCGTCGTCTCTCTGA
Seq A exon
GTAAGCAGGATCTTATGTGCCCTTGAGGGATGGGGCTGTCCCCTTCTGGGTGTTGGAAATTGCCTGCTGAGAAGACTTTGGCAAGGGCTCTGTCTAGGCAACAAAGAAAGATGTTGGTGCTAAGCCCAAAAGGGTTGAAGTGAGGGATCTCCTTGTAAATAATGCTAAATTGTGGAGTGGAAACTTAAGGCTCATCTTGGTTGGGGATTTGAGTCTCCTTACACAGCCACCTGGATCTGGGTCCTGGAAACAGGAGCACTGCCCTGGGGAAGGTGAGGGTGCTACTGGTCAGACCTAACAGTGTCAAGATAAAGTCGGAAGCAGAAAGGCTGTGACCAGAGGGTTTGAAGGAAGAGAACTGGCTCACTGGAAGAGAGCGTGTGGTTTTCTAGGAAAAGGAAGAGGGACTTAAGATATGTGACTGGAGGCTTGTGTCTGGCTTTTTTATCCTGTCATCCCAATGAGGAATCTAGGAAGCAGTTTTGTCCATTAACACAGAATTATTGAACTAACCTGGTGGGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTCCTTTTCTCCTGGACAG
Seq C2 exon
GGTTTCCCATCCCCAAATTGGACATGCTTTCTCAACAAGAGGGAGGAGAAGACCAATGGGCCCCTGACCCCCAGGATGTAGAAGGAAGGGACATCCTGAAGGTCACATATACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000022987-Zfp641:NM_173769:4
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.111 A=NA C2=0.808
Domain overlap (PFAM):
C1:
PF0135222=KRAB=FE(90.6=100)
A:
NA
C2:
PF0135222=KRAB=PD(0.1=0.0)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGCCTAGTAACTATCAAGGATGTGT
R:
ATGTGACCTTCAGGATGTCCC
Band lengths:
238-817
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: