BtaINT0165895 @ bosTau6
Intron Retention
Gene
ENSBTAG00000016496 | ZNF641
Description
zinc finger protein 641 [Source:HGNC Symbol;Acc:HGNC:31834]
Coordinates
chr5:32104109-32104973:+
Coord C1 exon
chr5:32104109-32104238
Coord A exon
chr5:32104239-32104859
Coord C2 exon
chr5:32104860-32104973
Length
621 bp
Sequences
Splice sites
5' ss Seq
TGAGTAAGC
5' ss Score
5.78
3' ss Seq
TTTTTTTCTCCCACGGTCAGGAT
3' ss Score
7.81
Exon sequences
Seq C1 exon
GGCCTGGTAACCATCAAGGATGTGTCACTGTGCTTCTCTCAGGAGGAGTGGAGGAGCCTGGACCCTTCTCAAACAGACTTCTATGGAGAATATGTCATGCAGGAAAACTGTGGGATAGTGGTCTCCCTGA
Seq A exon
GTAAGCACAACCTTCCCCAGCCACTCAATGACTGTACTCTAGGAGAGTGGAGCCATCTGCTCTGGGACTGTTGCATAGTGTCCATTTGGGGTTCTTTTCTTGGCAGGAAATCTGTCTAGGTTTCCACTAGGGAAAGAGCACTAGGGTTAATCCAAAGAGAATAGAAGTGTCACTTTTTTAAAAACAACAACAAAATGCTGTGAATTATTAGAGAACTTTAGGCAATTCTTGGTTGGGAATTGGGAAGTTCTTTCAGAGAGAAGGACACCTAAGAAGTGGAACTGAGTCGTTGGAAAGTCAGAAACCATATAGGAAAGATGAGAGTGGGGGTGGGGGTGAGACAGCTGTAGTAGGGCTAATTAAGTGAAGGTAGGACCAGAAAGAACAGTTGAGCTGAAAGTATTTGAAATTTGCACAAAAGAGAACACTTGGAAAGAGAATATGATTTTCTGAAAGAAGAGGGGACTTAACAGAAATGGGAGTGGGGAGAGGGAAAGGCTTGTTGTATCTGGCCTTCTTTATCTATAGAGTTCAAAGGAATAATCTAGGAAAAAGCTTTTTTCAGAAATGAAAATTACAGTTGAATAAACTGACATCTCTGTTTTTTTCTCCCACGGTCAG
Seq C2 exon
GATTTCCAATTCCCAAACTGGATATGCTTTCTCAACTAGAAGGAGGAGAAGAACAATGGGTCCCTGACCCCCCAGACTTAGAAGAGAGGGACATTCTGAAGGTCACATACACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000016496:ENSBTAT00000021929:4
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.045 A=NA C2=0.615
Domain overlap (PFAM):
C1:
PF0135222=KRAB=WD(100=95.5)
A:
NA
C2:
PF0135222=KRAB=PD(0.1=0.0)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGCCTGGTAACCATCAAGGATG
R:
ATGTGACCTTCAGAATGTCCCT
Band lengths:
238-859
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]