RnoINT0168535 @ rn6
Intron Retention
Gene
ENSRNOG00000032447 | Zfp641
Description
zinc finger protein 641 [Source:RGD Symbol;Acc:1310412]
Coordinates
chr7:139902500-139903301:-
Coord C1 exon
chr7:139903172-139903301
Coord A exon
chr7:139902614-139903171
Coord C2 exon
chr7:139902500-139902613
Length
558 bp
Sequences
Splice sites
5' ss Seq
TGAGTAAGC
5' ss Score
5.78
3' ss Seq
TTTCCTTTTCTCCTGGACAGGGT
3' ss Score
10.33
Exon sequences
Seq C1 exon
GGCCTAGTAACTATCAAGGATGTGTCCTTATGCTTCTCTCAGGAGGAGTGGCGGAGCCTGGACCCCTCCCAGACAGACTTTTACGGAGAATATGTCATGCAGGAAAATTGTGGGATCGTCGTCTCTCTGA
Seq A exon
GTAAGCGGGATCTTATGTACCCTAGAAGGGTGGGGCTGCCCACTTCTGGGTGTTAGAAGTTGCCTGCCTAGGAGACTTTCCTTGGCTGGGACTCTATCTAGGCAACAAAGACAGATGTTGGTGCTGAGCCCAAAAGAGTCGAAGTGAGGGATCTCTTTGGAAACAATGCTAAACTGTGGAGTGAAACGGTGAGGCTCGTCCTGGTTGGAAACTTGAGGCTCCTCATACAGCAGAGAAAGGGACGACTGGAGCTCGGTCCCAGGAACTGGAGCATTGCCCTGGGGAAGGGAAAGGTGGGGCAGGTCAGACTTAGCAGTGCTAAGGTAACGTTGTAAGCGGAAAGGACAGAGCCCGAGGGTTTGAGGAGAACTGGCTCTTAGGGAAGGAGTTTGTGGTTTTCTAGGAAAAGGAAGAGGGACTTGAGATGTGACTGGAGGCTGTGTCTGGCTGTTTTGTCCTTTCATCCCAGCGAGGAATCTAGGAAGCGGTCTTGTCCATTAATACAGAATTGCTGTTGAACTAACCTGGTGTGTGTCTGTTTCCTTTTCTCCTGGACAG
Seq C2 exon
GGTTTCCCATCCCCAAACTGGACATGCTTCCTCAGCTAGAAGGAGGAGAAGAACAGTGGGTCCCTGACCCCCAGGACGTAGAGGGGAGGGACATCCGGAAGGTCACGTATGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000032447:ENSRNOT00000045473:4
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.136 A=NA C2=0.744
Domain overlap (PFAM):
C1:
PF0135222=KRAB=WD(100=95.5)
A:
NA
C2:
PF0135222=KRAB=PD(0.1=0.0)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGCCTAGTAACTATCAAGGATGTGT
R:
GCATACGTGACCTTCCGGATG
Band lengths:
242-800
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]