HsaINT0187974 @ hg38
Intron Retention
Gene
ENSG00000167528 | ZNF641
Description
zinc finger protein 641 [Source:HGNC Symbol;Acc:HGNC:31834]
Coordinates
chr12:48344599-48345474:-
Coord C1 exon
chr12:48345345-48345474
Coord A exon
chr12:48344713-48345344
Coord C2 exon
chr12:48344599-48344712
Length
632 bp
Sequences
Splice sites
5' ss Seq
TGAGTAAGC
5' ss Score
5.78
3' ss Seq
TTTTCCTTTCCCATGAGCAGGAT
3' ss Score
7.64
Exon sequences
Seq C1 exon
GGCCTGGTAACCATCAAGGATGTGTCACTGTGCTTCTCTCAGGAGGAGTGGCGGAGCCTGGACCCCTCTCAGACAGACTTTTATGGAGAATATGTCATGCAGGAAAACTGTGGGATAGTAGTCTCTCTGA
Seq A exon
GTAAGCATGACCTTCTCCAGCCACTAGAAGATTGGACTCTGGGAGGACGGAGCCATCTGCTTCAGGGCTATTGGATAGTGTCTGTCTAGGACTCTTTATGTGGCAGGGAATCTGTCTATGCTTCCGCTGGAGAAAGAACACTAGGGCCAATCCCAAGAGAATGAGAGTAAATATCATTAAAAAAAAAAAAGTAAAAAAGCAAATGATGCTTAATTGTGGAGTAGAACTTGAGGTTCTTCTTGGTTGGGAATTAGGAGGTTCTCATAAAGCAGAGAGAACTGGAACTGGGTCCTTGTAAACTTGGGAACCATGTAGAGGAAGATAGGGATGCAGGGAGTAGGACTGTCGTAGTAGGACTAAAGTGAAGTTACGCCCAGAAAGGCCAGCTGGGCTGGAAGTATCTGAGTGGAAGAAAACAGGTTCATTGGGAAGGAGAGTGATTTTCTAGGCAGAGAAGAGGGACTTAACAGAAATGGGTGGGGGAAGAGGTTGGGGTGGGGATATGTTTCTTTCTTGACCTTCTTTTGTCTAGAGTTCCAAACAATAGGAAACAGTTTTTTGTATTTTTTTTTCAGAAATATAGAATTGCTGTTGAACTAATTGACAGCTCTATTTTCCTTTCCCATGAGCAG
Seq C2 exon
GATTTCCAATTCCCAAACTGGACATGCTTTCTCAACTAGAAGGAGGAGAAGAACAATGGGTCCCTGACCCCCAGGACTTAGAGGAGAGGGACATTCTGAGGGTCACATATACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000167528:ENST00000544117:4
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.034 A=NA C2=0.578
Domain overlap (PFAM):
C1:
PF0135222=KRAB=WD(100=95.5)
A:
NA
C2:
PF0135222=KRAB=PD(0.1=0.0)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGCCTGGTAACCATCAAGGATG
R:
ATGTGACCCTCAGAATGTCCCT
Band lengths:
238-870
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains