HsaINT0187974 @ hg19
Intron Retention
Gene
ENSG00000167528 | ZNF641
Description
zinc finger protein 641 [Source:HGNC Symbol;Acc:31834]
Coordinates
chr12:48738382-48741126:-
Coord C1 exon
chr12:48740932-48741126
Coord A exon
chr12:48738496-48740931
Coord C2 exon
chr12:48738382-48738495
Length
2436 bp
Sequences
Splice sites
5' ss Seq
ATGGTATGT
5' ss Score
8.35
3' ss Seq
TTTTCCTTTCCCATGAGCAGGAT
3' ss Score
7.64
Exon sequences
Seq C1 exon
CTCAGTCTGCTCCCTGGGTTCCTGCAATTCCCCAGGAGGGGAACACTGGAGACTGGGAGATGGCAGCTGCACTTCTTGCGGCTGGATCACAGGTGAGCTCTGCTTCCCTTGGCGTCTCCTGTGGTCCCATCACTGCTGCCTTTGTATTGCTTTCGCATCAGCCCATTGATGAGTTGGCTCACATGATCATCAATG
Seq A exon
GTATGTTCATCTTATAACTGAATAGATTCTATCCCTTTCCAAGGGGTCATAAGACCCTTGGAAAATTAAATGGACCTACAAGAAAGGGAATTCCTTGAGGTTAGGGTTTTTTTGAGTTTTGTTTTGTTTTTTGTTTTTGAGACAGAATCTCACTGTGTTGCCCTGGTTGGAGTGCAGTGGTATGATCTTGGCTCCCTGCAACCTCCACCTTCTGGGTTCAAGCGATTCTTGTGCTTCAGCCTCCCAAGTAGCTGGGACTACTGGCACACGCCACCACACCTAGCTAATTTTTGTGTTTTTAGTAGAGACAAGGTTTTGCCACGTTGGCCAGGCTGGTCTTGAACTGCTGACGTCAGGTGATCTGCCCACCTCAGCCTCCCAAAGTGCTGGGGTCACAGGTATGAGCCACCGTGCCTGGCCAAGGTTAGGGTTTTTAATGGATGGCTGTGTTTGTTATCCACAGGAGGATTTTAAGAATAATTAATTACCTTCCTTTAAGAAATAAATCTGGAAAGATTAGGAAAAGAGGACCTGAAGAAAGCTTAGAAGAACCTAAAGTGGAAGGATTGGGTAGATGAGGGAGCATTTATGGAAAAGAAGAGGAAGAAGGTTATAAAGAGGGGCAGAGCTAGAAAGGAAATTAGGTTTAGATTCAGAAGGCAATAGGAGAGCTGTGGAAAGCTAATACTAATAGTGTTAGTACTAATAGAGTACACCCCCAGAGTGTTTATCATGTATGCCATTTTCTGGGTGCTTTATGTATATTAACTCATTTAATTCTGAGAACAACTCAGTTATCCAATTTTACAGATGAGGAAATGGGGCAGGGAGAGATTAAGGCACTTGTGTAGGTCATGCTGCAAGAAAGTGGCAAAGCTGAGTCACTTGGCTCCAGATTCTGAGCTCCTAACCACCATACTGTGCTGCCTAAAAATATAAAGATATGGCCAGGCACGGTGGCTCATGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGTGGGCAAATCACAAGGTCAGGAGTTCGAGACCAGCCTGGCCAACATGGTGAAACCCCGTCTCTACTAACACCACAAAAAAAATAGCTGGGTGTAGTGGTGGGTGCCTGTAATTCCAGCTACTTGGGAGGCTGAGACAGGAGAATCGCTTGAACCTGGGAGGTGGAGGTTGCGGTGAGCCAAGATTGTGCTACTGCACTCCAGCCTGGGCGACAGTGAGACTCCGTCTCAAAAAAAAAAAAATGCTGTGGCAAGGGAGGCAAGAAAGAATGTTTTATCTGTAGCATTTTGTGCTGATAGAAAAGGCAGGGTCCAGTGGAAGAAGGAGGAAATGGTACATAATTTCTTCATAAAAAGAGTAAGGCCAGGGAGAAGTGACTGAGTAGACACCTGTAGCTAAACAGAGGTGGTGATGAGTTTATGGTGCCTCCAGCTTCTCATGGCCCCACTTGGGAAATTCCTCCAGTAACATTACACTCACTCACTCCTTGACCATCTACCTTTACTCCTCTCCTCATTTCCCTGTTACCAAAACTATGTGCCCTACCCAGGGACTTCTGGGCAGCTCTTTTCTCAGATCATTTCTCACCCTCTCTCCTCTACTAACTTAGCCTTTCATACTGAATCACATTTTCCTTAAAAAACAGCTGCTGACAGAAGATGCTACATTTTGTTTCAGGGCCTGGTAACCATCAAGGATGTGTCACTGTGCTTCTCTCAGGAGGAGTGGCGGAGCCTGGACCCCTCTCAGACAGACTTTTATGGAGAATATGTCATGCAGGAAAACTGTGGGATAGTAGTCTCTCTGAGTAAGCATGACCTTCTCCAGCCACTAGAAGATTGGACTCTGGGAGGACGGAGCCATCTGCTTCAGGGCTATTGGATAGTGTCTGTCTAGGACTCTTTATGTGGCAGGGAATCTGTCTATGCTTCCGCTGGAGAAAGAACACTAGGGCCAATCCCAAGAGAATGAGAGTAAATATCATTAAAAAAAAAAAAGTAAAAAAGCAAATGATGCTTAATTGTGGAGTAGAACTTGAGGTTCTTCTTGGTTGGGAATTAGGAGGTTCTCATAAAGCAGAGAGAACTGGAACTGGGTCCTTGTAAACTTGGGAACCATGTAGAGGAAGATAGGGATGCAGGGAGTAGGACTGTCGTAGTAGGACTAAAGTGAAGTTACGCCCAGAAAGGCCAGCTGGGCTGGAAGTATCTGAGTGGAAGAAAACAGGTTCATTGGGAAGGAGAGTGATTTTCTAGGCAGAGAAGAGGGACTTAACAGAAATGGGTGGGGGAAGAGGTTGGGGTGGGGATATGTTTCTTTCTTGACCTTCTTTTGTCTAGAGTTCCAAACAATAGGAAACAGTTTTTTGTATTTTTTTTTCAGAAATATAGAATTGCTGTTGAACTAATTGACAGCTCTATTTTCCTTTCCCATGAGCAG
Seq C2 exon
GATTTCCAATTCCCAAACTGGACATGCTTTCTCAACTAGAAGGAGGAGAAGAACAATGGGTCCCTGACCCCCAGGACTTAGAGGAGAGGGACATTCTGAGGGTCACATATACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000167528-ZNF641:NM_001172682:3
Average complexity
IR-C
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.397 A=NA C2=0.628
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0135222=KRAB=PD(0.1=0.0)
Main Inclusion Isoform:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)