GgaINT1003915 @ galGal4
Intron Retention
Description
Uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:R4GLA1]
Coordinates
chr2:541631-543542:+
Coord C1 exon
chr2:541631-541757
Coord A exon
chr2:541758-543411
Coord C2 exon
chr2:543412-543542
Length
1654 bp
Sequences
Splice sites
5' ss Seq
TGGGTAAAG
5' ss Score
4.2
3' ss Seq
TCTTTTTTTCTTTTTTTAACATA
3' ss Score
2.13
Exon sequences
Seq C1 exon
GTCCCCATGGCGTTTAACGACACTTCATTTAGCTTCTCGGAGGACGAGTGGAAGAACTTGAACGAGTGGCAGAAAGAGCTTTACAGGCATATCATGAAGGGCAACTACGAGGCCGTGATCTCGATGG
Seq A exon
GTAAAGGCTGGCTGGGGCTTGCCCTGTGCTTTTTGGCATCACAGGTCCTTCAGGGCCAGGCTGTGCCTGGTGGATCCGGGAGGGTGGGTGGTGAGCAAGGCTGGCCAGGTCTTATGCTGACTTTCAATAGCAGCCCCAGAAATCAGCACTTTGCTCCTCACTGTGTTAGTTGTGCAGTGGATGGATGTTTTGAGCAGTGCAGTGACTCTGCCTTTCTGATGGTCTCTGGCCATCCAGCTGGAGCCATGAGAGGACCTGGGTTATGAGGACCAGGGAAATGAGAGACTTACAGGCTCTGGACAAAAAGGGAGCTTCATGGTGATGCAAAGGTCCACAGATCTACTGTGCTTGGTGCATCAGTTCGCTGCTGCTTCGGATGAGTACCAGCAGTTCTTCCCAGCCTTGTCTGTAGATCTGTCCTCCCATCAGCAGAACGCTTCTTAGGGAAGGAGAGCACAGTTTGTCTGCCTTGGTGCTCTGCCTCACCCCCAGCCTGGTGCTGGAGAACTCTTCTTGTGCAAACTGTTGCAACGTCTGCTCCTGCAGGTCTCAGCCCTCTGCTTTGCTTCTGATGGCTCAGGGCAGATTGTTCCATGCTGCACAGATGTGCCGTGCTGGCTCCTTCCAGTCCTGGCTGTGGGACTGTGCTGCACCCCTGGGAGCCCTCGTGAGGGCTTTGGGCACCTGTGTGTATTTTGAGAAATGGTGCTGCCTTGGCTGGACATCCATGTGGGAGCGCAGACGTTCCTGGCAGACAACCATGCTGCCCTCCAATTCTGTACAATCCACGTCTTTCCAGCTTTTATTAATATATATATTTTTGGACAGTCCCTGTGTAGAAGAGAAAAAGGCAAAGGATAAATATTACCCCCATTCTCCTGTGCAAACAACAGTCCTGCTGTGAAGGTGCAGGAATGTAAAAGTCCTACTGGAAGAGATCCGTGGGTCTGAGCCTGGAGCTTAGAAAAATGTATCTGTGCTTAATCTGAAGGTTCCCTTTTGTTTTGATGAATTGGGTTTAAGGCTAGGTCCTCGTTAAGGCTAATGGATCCAGCAGAGCAGTGGTGGAAATTAATACCCAGAGGCTCACGCTTGTTGTTTCAAAATTAAGTTTCCGCTCTCCATGCTAGGGGAAATTTTAATTTTCCCATTTCCCCCACCAAAATCCACAAGCAGCCTGTGACTCGGACGAGTAGGAAGGAACGGTTCTGGCTGTGGCAATCCGGGGCTGGAGGGAACCGTGTGGGGAGGGCACCTCCGCTGCTGCCGCTGGCTGACAGCTCTGGTTCTGACCCCAAGCTGAAGCTCCCATTGCAATGGATCCACGGACTTTAGCACAGAGGAGAAGAGAGGAGGCCTGAAGGTAAGCACAGATGCATTTTCTTATTCTGCTCCTCGCGCTGCAGGCTGGGAGGTGCTCCTCACCTGAGCAGAGCGTGCTCCTGCAGTCTGCTCACTGTCCCAGGGCCCACACAAGGTGAGCGGTGCAGGCATGTGAGAGCATCTTCTTAAGTCTCTTTCCATTACCTGTCCTCCCCAGCAGCAAAGGAAGGTCGGTGGGTGAAGGCTTAAGGTTCTCTGCCCTGAAAGGACAAAGGAAACATTCTGATTCTTTTTTTTTTCCCTTTTTTTTTTCTTTTTTTCTTTTTTTAAC
Seq C2 exon
ATACAGATACTGCAATTTCAAAACCTGACCTCCTGTCACGGATTGAGCAAGGAGAGGATCCCAATGCTGAGGACCAGGATGACTCTGAGGGAGGAGAAACCCCTACGGATCCCAGCACCGGTGAGACATGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000026922:ENSGALT00000044711:3
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.070 A=NA C2=0.837
Domain overlap (PFAM):
C1:
PF0135222=KRAB=WD(100=95.3)
A:
NA
C2:
PF0135222=KRAB=PD(0.1=0.0)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTCCCCATGGCGTTTAACGA
R:
TCATGTCTCACCGGTGCTGG
Band lengths:
258-1912
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]