BtaINT0166076 @ bosTau6
Intron Retention
Gene
ENSBTAG00000002810 | ZNF777
Description
zinc finger protein 777 [Source:HGNC Symbol;Acc:HGNC:22213]
Coordinates
chr4:113257223-113259435:-
Coord C1 exon
chr4:113259309-113259435
Coord A exon
chr4:113257337-113259308
Coord C2 exon
chr4:113257223-113257336
Length
1972 bp
Sequences
Splice sites
5' ss Seq
TGGGTAAGA
5' ss Score
8.91
3' ss Seq
CTTTTCTTCCTCCTGCCCAGACT
3' ss Score
8.02
Exon sequences
Seq C1 exon
GTCCCTGTGACATTCGACGACGTGGCCGTCCATTTCTCGGAGCAGGAGTGGGGGAACCTGTCCGAGTGGCAGAAGGAGCTGTACAAGAATGTGATGCGCGGCAACTACGAGTCTCTGGTTTCCATGG
Seq A exon
GTAAGAAGACGGCTGTCTGCCCACGGCTTCCTGCCGGCCTGCTGGGGGCTTGTTAGGAACCTCTGGGGCCTCTGAATGCCCAGAAATCATTTTCAAGAGCCCAGTAAAAAAGAACAGGCACCCATATACCCACATACACCAGTGCAGCATAGATCAGCACAGTTTGTAAACAGAGAAACCACTCTATGGAGAAGCCACAGGAGTCGGGGGACAAACTTGGACATCAGTGGTGTTTACATATATATATATAAACCTTAAAATTAGTTTGTCCAGGAGACCCTTACTGAACAAAGTGTGAGATGCCTTGTGAGAACGGCACTTAAACAGCACACCTTTCCTGTGCGGGAGTTAGAACAGGTATCAGCCATGAATACTGCCATTGATTGTGATCTCTTGTCCCCCTTGTGCAGAGATGAGGTGTGACCCCGGGGATTAAAGGAACATCCTAGGTCCCCACCGGGAGGTCACAATTTCACCGAGATCTCTCCTCCCCCCAAATCTGTATATTCTTGTTATCTTTGTTAATAGGAGTATTTGAGGATGAAGACTTAGGAAGATAAGCTTTAGTATTGTATGTATCCTTTTCTCTGATGTGGGGAACTCTTTGGACACACACCCACACCCACACACACACACACACACAAAATTAGAAAAACATTAAATATGCTGTTGCATAGAGAATTTGATCCTTGCTGGAACTGTTACTTTTATCCATCTATACTTCTCCATGGGGTACCTTTTTTTTCCCCCACTTTTCTTTTTAAAGTACATACATAATTGTGTGAATGCAACAATTTAGGTTTGTATAATAACGAGCAGCCGCCACCCTCTAGTCAGTGCTGCTCCCCCGAGGGAACCACCGTGGACCCTGGGGCCTATACTGTTTCCCATCATTTTGTGCGCTCGTGCAAGTGTGGTTTGTGGTTTGCACAAATGGGATCCCTCACTTATTTTACCAACGGTAGCCAGAGACAGCTCCTGTGTCAGCCCACAGGCCCGCTTGAAGGGCAGTGCAGTGTTCCTGGTGAACCGTTGTGCTGTCGATATTGAACTATTGATGAGCGGCAGCCCTGCTGCAGAGGGCTGCAGTCAGGATTTCTCTGTGTTTGTGCACTTCCGCGAGTATTTCAACAGGATGGATTCCGGGAGGTGGGCTTGCCAAGGAAAGAGGTGCTCGTGTACAGTGTCACAGGCACTTCCATGGGCCGTCCCCAGGGCTGTGTGTGTGTGTTTGCCTAGCAGTGTGACAGCGCCATCTCCACACCCTTACCCCAGCCGCGGTTCTCCTGTTGTAAAGATCTGTCTTTTCTGGTGGACAAAAAATGATACTGACTTGTATCGGTATGGGAACTTGTGCGTTTTTTTATGTGTTTATGAATTACCTATTCGTACCTTTGATATTTTTATTTCAGTAACCATAGAGGCTATATATATATATATAATTGTGGATGTTAACCCTTGGCCTTATATTTTACAAATGTATGTGACATACTGTTTTCTTCAAGTTTCATAATCTTTTGACTTTATTTCCAAAGAACTTGAAACTTTTTGTAATGTAAAAAAACCTGTCAGTGTTTTGTTTCGTGACCTCTAGATTTTATTAAGGTTAGTTTTTTCATTTATAAAATGTTAAGTATCTTCTGCCTTTGTCATGAAAGTCCGAGCAGGCATTGGCCACCTGTGAGCCACAGATGACCGAGGGCTGGTTTCCATCAGTCAGCAAGTGCGGCCCATTGCTGGTCCCGCCGGGAGGACCTGAGATGGGTTCAGCACACACACACACACGTGCGTGCACATGTGCACACTCAGCACGCCCTGAGGAGAAGGGCTGGAAACTTGGCCCTTCGGTTTGCAGCACTGCGGCCTCAAGTAGGGCAGCTGCTCCTGGTGTCACATGCACACAGGGGACAGTTTTGTAGCATTCAGTGCGACATCACCCCATAGAACATCTTCTTTTCTTCCTCCTGCCCAG
Seq C2 exon
ACTATGCAATTTCCAAACCAGACCTCATGTCACAGATGGAACGAGGGGAGAGGCCGGCCATGCAGGAGCAGGAGGACTCTGAGGAGGGCGAGGCGCCTGCCGATCCCAGTGCCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000002810:ENSBTAT00000003635:2
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.023 A=NA C2=0.808
Domain overlap (PFAM):
C1:
PF0135222=KRAB=WD(100=95.3)
A:
NA
C2:
PF0135222=KRAB=PD(0.1=0.0)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTCCCTGTGACATTCGACGAC
R:
GGCACTGGGATCGGCAGG
Band lengths:
240-2212
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]