MmuINT0179849 @ mm9
Intron Retention
Gene
ENSMUSG00000071477 | Zfp777
Description
zinc finger protein 777 [Source:MGI Symbol;Acc:MGI:1919556]
Coordinates
chr6:47987554-47992154:-
Coord C1 exon
chr6:47992028-47992154
Coord A exon
chr6:47987668-47992027
Coord C2 exon
chr6:47987554-47987667
Length
4360 bp
Sequences
Splice sites
5' ss Seq
TGGGTAAGA
5' ss Score
8.91
3' ss Seq
CTTTCCTTCCTTCTGCCCAGACT
3' ss Score
8.48
Exon sequences
Seq C1 exon
GTTCCTGTCACATTCGATGATGTCGCCGTCCATTTCTCTGAGCAGGAATGGGGAAATCTCTCTGAGTGGCAGAAGGAGCTCTACAAGAATGTAATGAGGGGCAACTATGAGTCTCTGGTCTCTATGG
Seq A exon
GTAAGAGCAAAGGACTGTGACATGGGTGTGAGACCTGTGTAGACACTTAGGAAATGTGAACAGCAGCTCCTGTATTGGGAAAAGGCAAACATTTTGTTTGGCTTTGGTTTTATTTGAGTGTTTGGAGTGTGGCACTTGTTTGGGCTTGGGTTTGTGTGTATGTGTTGTTTTGTTTTGAGATAGGACTGTCCTGGCTGGCCTGGAACTTGCTGTGTAGACTAGGCTGGCCTCAAACTCACTAGGATCCTCCAGCATCTACCTCCCCAGTGTTGGGATTATAAGCGTGCACTACAATGCCCAGCAGATGGTTTTAACAGGATCTTAGTAAGGCTGGCCTTGAATTCAGAATCCTGCTGCCTCAACTTCCTGAATGTTGAGATCATAGACGCTTCACCTGGCTTCAAACAGAATTTTACTTGTATTGTGTGTACATGTATACTGTAGTGTGTGCATGTGTGTATGTGTATACATGTATACTGTAGTGTGTGCATGTGTGTATGTGTGTACATGTATACTGTAGTGTGTGCATGTGTGTATGTGTGTACATGTATACTGTAGTGTGTGCATGTGTGTATGTGTGTACATGTATACTGTAATGTGTGCATGTGTGTATGTGTATACATGTATACTGTAGTGTGTGCATGTGTGTATGTTAATGTCAAACTTCATCTTATGTTGTTCTCCTCATTAGTTTTTGAGATGATTAGACTGCCTAGTCAGAGTGCTTGTGGGACCTGCCTCCCTCCCCACAATTCCCCCCACCCCCACTTCCACCAGCACTAGAGTCACAGATGGGCACCACTACCCCCAACTTTTATGCAAGTGCTGGGCATCAGACCCGTGTTCTTATACTTACCGGCAGGCACTTGACCAACTGAACCATCTCCCTACCAACAGAATTTTAGAGTGCCACAACAGGCTAGAGGTTGCTCAGTGGTTAAAGGGTCCCATCTTAGACATCAGGCAGCCTACCACCACCTGTAACTTCAGCTCCGTAGGATCTGAATCTCTTCTGAACTTCATAGGCATCTGGAATCACGTGCACAAACATACATATACATGTAATTAGAAATAATTTTTTCTTTTAAAAAGACTAACACAGATGAAGAGAAAAGCCTCTTGTGTCCCTTGTATGTCAGCAGGGCACAAGCGGGCACAGTCTGTCCATGAAGACACCACACTACGGAGAAGCGCTTGGGGCAGCAGGCAGCAGGCTAGACTGTGGTGGGCTCTCACTGTTGGCATTTTCCTTTGCACCTTGCTTTCAAAAGTCATTTGTCTAGCAAACAATCATTGAAAAAGGAAAAATGACTAGAAGAAAACAAATATACTGAGGACCTACTGTGTGCCAGCAGGGTGTGAAATGCTTCCCAAGAGTAACATACATAGTAGGGACAAAGGAAAAGATCAGAGATCTAGTTTTCTTACTCATACACGTTATCACTTAAGCCTGTGGCCCCAGAGTCCTGGTCCCCATCAGGAAGTCATGGTCTCACCAAAATCTGTGCCAAAGTCTGCCGATTCTTGTTTTCATTTAAAAATATGAAAGGAAGCCGGGCGTGGTGGCGCACGCCTTTAATCCCAGCACTCGGGAGGCAGAGGCAGGCGGATTTCTGAGTTCGAGGCCAGCCTGGTCTACAAAGTGAGTTCCAGGACAGCCAGAGCTATACAGAGAAACCCTGTCTCGAAAAAAAAAAAAAACAAAAAACAAAAACAAAAAAAAAAAAATGAAAGGATAGAAAACTGGAAAGTTGGACTTTTTCTGTTGTGCAGAATTTTTTGACATAGACAAAAGAAAAACCTGAGGGTACTGGGGAGGTGACTCAGTAGATAAAGAGTTTGTTGTGCAAGCACAGGAAACCTAAGTTCAGCTCACCGCCACTCACATAAAAGCCAGACACCTCAGTGTGTGTATGCAATGCTGGGGGTACAGAGACAAGCAGGTGCCTGGGGCTTTACTGTCTAGCCAACTAGTCAAAACAGCTTCAGGTTCACTGAAAGATCTATCTCAAAAAAATATGCAGGAAAGTGAAAGATAAAAAAAAAAATGCTGTCTTCCATGTATGTGCACAAGTGAGCACACCTGCATATACTCTTCCCTCAACCCCATGAACACACAAATGAAAGAGAGAAAGGTTTAAACGTTGAGTGCACTGTTTTTGCACATAAGATACAAATAAATATGGGGCTAGAGAGAGAAAGCTCAGCATTTAAAAGCACAGGCTGCTCTTCTAGGGGACCCACCTGTATTTGGTTCTCAGCACCTATGTGGTGGCTCACAACCATTCGTAATTTCAGTTCCAAAGGATTTAATGTACTGTTACTTACCTCTGTAACTGCTGGACAGACAGACGTGTAGGCTAAATGCCTGTAGACATTTAAAGTAAAAATAAAACCACCCCAATAATGAAATTAAAAATATAGAATTTTTTTAAAAATAATTTTGACTTAGGCAAGAATAGTTAATTTTAGATATAATTTCCCATAGGCTAACATTACTTTTTAGAACTATGTGGTTTTTTAAAAAAGATATGCTATTATGAAAGCTTAACAATTTATAATAACATAATAAAGAGCAACCGCTGTGCACTCACCACTGCTACCTCACAGAGGAGCCACCCCATAGAGGAAGCCACCAGGAGCGTCCGTCACCCAGGTTCTGTATATGTGTAAACATATACACAGTGTATTCCTGTTAGACATGCAGTGTGGAGTTTGCATAGAGGCAACCATTCACTTCCATTCACTTTCTCATGTTACACCAGGGGACCTTTATCAGCACCTGTAGGCCACAATCCCTGAAAAGAAAGTACAGTATCCAGGCAAACTTCGTTTGTTTTTGTTTTTTTAATGTTACCTGTATGAGTGTTTTGCTAACATGTGTACCACGTGCATGCCTAATTAATGCCCATGGAGACCAGAAGAGGGTGTTGGGTCCCCTGGAACTGGAATTACAGATATTTGTGAGCCACCATGTGGGTGCTGGGAACCTAACCCAGGTTGTGTACAAGAGAAATAAGTGTTCTTAACCCCTGACCTTTCTCTGTGACCCCCTGAACTCTGGCTTTTGACCATACTGCTGCTGACCTGTGGGTGCTTCTGTCTCTCACTGCAGAACGTTGTGGTAAGCAGCCCTGTATATCTGTGCAGTGGCCCAGTGTTTACAGAATAGATGTGAAGTGGGTTGTGGAGAAGATTCACTACCGTGGAGCCTTCTAAACAGCTGAGCCCATGTCTTGTCTGCATGTACATGAGAATACTGTTTCTCCATGCCCTGGTTTATTCTGTCTTAATATCTTTGTGTGGTTTGTTTTGTTTTTCTGAGACAAGATCATGTAACCCAGCCTGGTCTCAAATGTGCTGACCTTGAACTCCTAATCTTTCTACACCCTGAGTACTTAATCTAAGCAAATATTTGTCCTTTTGATAGATGAAAGACATTGTACTATTTTTATTTGAATGTATTTCTTGGATGATTAGTAAACTTGTGTATCTGTTTTATATAATTAGCCATTTGTCTATCTCCTACAAATTACCTATTTATACTTTTGCTCTTGTTTTCTACTGATTATAGAGGTTGTTTTTATAGAATTATGAATATTAACCATTTACTATATGTGAATATGTATTTTTCTAATATTTCCTCTTATTTTTATTCAAAATAACTATAAACTTTTTGAGGAGTATTAAGGATTTTAACCTAGGGTCCCATACATGTTAAACACACACTCTGTCACTAAGCTACATGCCTGTTCCTCTCTTTCTTCTTTTCTTTCTTTTTTTTTTTTTTTCCTATTTTTTTTTCTTTTTTGAGACAGTGTCTCACTATGTAGCCTTGGCCAGCCAGAAAGTTACTAAGTAGCTCAGCATAATCTAGAACCTACCTCTACTTCCCCAGTGCTGAGATAAGGGTGTGTGCCACCACATCTGAACTCTTGTTTTTTGGAACAGGATCTCAGTCTATGGCCCAAGTTGGCATTGGATTCACAGAAGTTCTCTTTCTACCTCCCAAGTGCCGGTATCGCAGGCATGAGCCGTCATGCTTGGCAGCCCTCTTTAATATAAGGAGCTTTTATCAGTGTTTTGTTTTATGAAGTTTATACTTTATCAGGATTAAGTTTTTACTTCATACAATTTCAACTTTGTCATGAAGCTCTGTGCAAGTTTTAGTGTCTGCCAGCAGCATGAGACACAGACCTAAAGGGCCTTGGAGAAAGAGGTGAATACTTGCCCGTTTCTTTGCCAGCATAGCCAGTCCCCGGCAAAGGGGCTATTCTGAGCCATGCCCCCACGGGTGATACCTTACAGCATACAGTGCTCCCTCTTAGACAGAATATTTTCTTTCCTTCCTTCTGCCCAG
Seq C2 exon
ACTATGCAATATCCAAACCGGACCTCATGTCACAGATGGAGCGTGGAGAGAGGCCAGCCATGCAAGAACAAGAGGATTCTGAGGAGGGTGAGACGCCCACAGATCCCAGTGCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000071477-Zfp777:NM_001081382:3
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.023 A=NA C2=0.803
Domain overlap (PFAM):
C1:
PF0135222=KRAB=PU(95.1=90.7)
A:
NA
C2:
PF0135222=KRAB=PD(0.1=0.0)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: