RnoINT0168645 @ rn6
Intron Retention
Gene
ENSRNOG00000033639 | Zfp777
Description
zinc finger protein 777 [Source:RGD Symbol;Acc:1566056]
Coordinates
chr4:77700069-77704377:-
Coord C1 exon
chr4:77704251-77704377
Coord A exon
chr4:77700183-77704250
Coord C2 exon
chr4:77700069-77700182
Length
4068 bp
Sequences
Splice sites
5' ss Seq
TGGGTAAGA
5' ss Score
8.91
3' ss Seq
CTTTCTTCCCTTCTGCCCAGACT
3' ss Score
8.45
Exon sequences
Seq C1 exon
GTTCCTGTCACATTTGATGATGTCGCCGTCCATTTCTCTGAGCAGGAATGGGGAAATCTCTCTGAGTGGCAAAAGGAGCTCTACAAGAATGTAATGAGGGGCAACTATGAGTCTCTGGTCTCTATGG
Seq A exon
GTAAGAGCAAAGGACCGTGACGTGGGTGCGAGGCCTGTGTGTAGGAAATGTGAACAGAAGCTCTTGCAGGGGGAAAGGCAAATATTTGTTTGGCTTTGGTTTTATTTGGTTGTTTGGGGTATGGCACTTGTTTGGGTTTGTGTGTATGTGTTATTTTGTTTTGAGATAGGACTGCCCTGACTGGCCTGGAACTTGATGTGTAGACCAGGCTGGCCTCAAACTTACTAGTCTCCTCCAGTGTCTACCTCCCTAGTGCTGGACTATAAGCATGCACTATCTTGCCCAGCAGATGGTTTTAACAGGGTCTTACAGTTGAGTAAGGCTGGCCTTGAATTCAGAATTCTGCTGCCTCCACGTCCTGAATGTTGAGATCATACACATGCACTACCTCCCTGGCTTCAAACAGAATTTTACTTGTTTTGTGTGTACATGTATACTGGAGCGTATGCATGTGTGCATGTGGAAGCCAGAGGTCAGTGTCAAACTTCAGCTTCCTTTGCTCTCCTCATTAGTTTTTACGATGATTAGACTGCCTAGTCAGAGTGCTTGTGGGGCCTGCCTGCCTCCCTCCCTCTCTGTCCCCATCCCTTCAGCATTAGGGTCACAAACTGGCACTACATCCAAATTTACATGAGTGCTGGGAATCAAACCCTTGTTCTTATTCTTACCGGGCAGGCACTTTACCATCTGAGCTATCTTCCCAGCCCTACAGACAGAATCTTAAAGAATGCCACAGACAGGCTAGAGATTGCTCAGTGGTTAAAAGTTCCCAGCATAGACATCAGGTCGCCTACCACCACCTGTAACTTCAGCTCCAGAGGATCTGAATCTCTTCTGGAATCACAACATACATATACATGTAATTTAAAATAAATTTTTTCTTTTAAAAAGACTTAACACAAATACAGACAAAAGCCTCTTGTGTCCCCTTGTATGTCAGTATGGCACAAGCAGGCACAGTCTGTCCATGAAGACTCCACACTACTGCTTGGGGCAGCAGAGAAAGAGCAGGCTAGACTGTGGTGGCCTCTCGCCATCAGCATTTTCCCATGCACCCTGCTTAAAACAGTCATTTGTCTAGCAAACTGTCATTGAAGACGGGAAAAGACTAGAAGGAAACAAATGTACTGAGGATCTATTGTGTGCCAGGAGGGTGTGAAATGCTTCCCAGGAGTGACATGTACTGAGGGACTGATGACAAGATTACAGATCTAGCTTTCTTACTCATACAACTGAACGCTATCACTTAGGCCTGTGGCCCCAGGATCCTGGTCCCCATCAGGAAGTCCTGGTCTCACCAAAATCTGTCTATGCCAGTGTCTATCAATTCTTCTTTTCATTGAAAACATGAAAGGACAGAAAACTAGGAAGTTGGACTTTCTTCCCTCAGGTATCCTTTTCTCTTGCATATAGAATTTTTTTACATAGACAAAAGAAAAATCTGAGGGGACTGGTGAGATGAGTCAGCAGATAAAAAGTTTGTTGTGCAAGCACAGGAAACCTAAGTTCAGCTCACCACCACTCACATAAAAGCCAGACACCTCCGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGNNTGTGTGTTGTGTGTGTATGCATGCAGTGCCGGGGGGTGTGGAGACAAGCAGATGCCTGGGGCTTTACTGTCTTTTTACTGTCTAGCCAGTCAAGTCAAAACAACGTCAGGCTCAGTGAGAGATCCTATCTCACAATATGGAGGCAAGTAAAAGATAAAGCCTCTGCCTTCCATGTATGTGCACAGGTGAGCACACCTGCACATCCTCTCCCTAAACCCGCGAACACACAAGTGAGAGAGAGAAAGGTTTAAATGTTGAGTGCACTGTTGGGCATGTAAGGTAAAAATAAGTAAGGGTCTGACTAGAAAGAGAGCGAGCTCAACATTTAAAAGCACAGGCCGCTCTTCTAGAGGACCTACCTATATTTGGTTCTCAGCATCCATTGGTGGCTCACAACCATTTGTAACTTCAGTTCTAAAGGATCTGTTATACTGTTCTTGCCTCTGTAAGCACCATACACGTGGTGGACAGACAGACATGTAGGCTAAATGCCTTTAGACATAAAGTAGAAGTAAAATCTCCAAAAAATTAAGTTAAAAACGTAATATTTTAAAAATAATTGATTCAGGCAAGAATAATTAATTTTAGATAGAACTTTCCATGGGCTAGCATTACTTTTTAGAAATACATGCTTTTTAAATACATATGCAATTATGAAAACCTAGCAATTTATAATAACATAATAAAGAGCGACTCCTATGCACTCACCCGTGATACCTCACAGAGTGCCACCCCATAGAGGAAGCCACCAGGAGCCTCGCTCATGTTCTGTACATGTATAAACATACACACGGTGTATGTCCTGTTGTTATACATGCAGTGTGGAGTTTACCCAAAGGCAACCATTCACTTACAGTACCGCATGATAGACCAGGGGACCTTTATCAGCACCTATAGGCCACAATCCTTGGAAAGAAAGTTCAGTATCCAGGCAAACGTTTTGGTTTTTGTTGTTTTAATGTTCCATGTATGACATGTGTGTCATGTGCATGCCTGGTGCCCATGGAGACCAGAAGAAGATGCTGGGTCCCCTGGAACTGGAGTTACAGGTATTTGTGAGCCATCATGTGGATGCTGGGAACCTAATCCAGGTTATGTACCAGAAAAACAAGTGTTCTTAACCCCTGGCCTTTCTTTGACCCCCTGAACTCTGGCTTTTGACTGCACTGCTGCTGATCCGTGAGTGCTTCTGTCTCTTTCGCTGCAGAATGTTGTGGTAAACAGCCTTACGTATGTGTGCAGTGACCTAGTGTCTGATACGACAGATACCAAGTAGGTTGTGGAATAGAGGATGCACACTGTGGGGTCTCCTAAGCAGCTGAACCAGTCTCGTCTGCTTGTACATGCGGATACCATCCCTCCATGCCCAGTTTATTCTGTCTTAATATCTTTGTGTTTGTTTTATTTTGTTTTTCTGAGACAAGATCATGTAACCCAGCCTGGCCTCAAATGTGCTGACCTTGAACTCCTGATCTTTCTACACCCTGAGTACTTAATCTAAGCAAATATTTGTCCTTTCGATAGATGAAAGAAATGGTACTATCTTTATTCGAGTGTATTTCTGGGGTGATTAATAAACTTGTGCATCTGTGTTATATAATTACTAGTCATTTGTCTGTCCCTACAAATTATCTACTCATCTTTTGCTCTGATTTTCTACTAATTATGAGGGTTGTTTTATATAGTTATGAATATTAACATTTACATATATGATGCATATGTATGTGTGTTTCTAATACTTCCTCCTCTTTTTATTTCAAAATAACTATAAACGTTCTGAGGAGTATAAGGACCTGAACCTAGGGTCCCATACATGTTAAACACATACTTTGTCACTAAGCCTCATGTCTGCTCGTTTCTTTTTTCTTTTTTTTTCTGTTTTTAATTTTAATTTTATTTTATTTTATTTTGAGACAGTGTCTCACTTGTAGCCTTGGCCAGCCACAAAGTTACTAAGCAGCCCAACCTAATCTTGAACTTACAGAGCTCTGCCTACCTCTGCTTCCCCAGTGCTGAGATAAGGGTGTGTGCCACCACATCTGAACTCTTGGTTTTTGGAACAGGATCTCAGTCTGTGGCCCAAATTGGCACTGGATTCACAGAAGTTCTCTTTCTACCTCCCAAATGCTGACATTGCAGGCATGAGTCGTCATGCTTGGCAACCCTTTTTAATATAAGGAACTCTTATCTGTATTTTGTTTTATAAAGTTTACACTTTATCAGGGTTAAGTTTTTACTTCATATAATTTCAACTGTCATGATCCTGTGCAAGTTTCAGTGTCTGCCAGCAGCATGAGACACACACTTAAAGGGCCCAGGAAAAAGAGGTTGAAAACTTGCCCATTTCTTTGCCAGCATAGCCTGTCCCCCAGCAAAGGGGGTATTCTGGGCCATGTCCCTACAGGTGATACCTTACAGCATACAGTGCTCCCTCGGACACAGAATATTTTCTTTCTTCCCTTCTGCCCAG
Seq C2 exon
ACTATGCAATATCCAAACCAGACCTGATGTCACAGATGGAGCGTGGCGAGAGGCCAGCCATGCAGGAGCAAGAGGACTCTGAGGAGGGCGAGACGCCCACGGATCCCAGTGCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000033639:ENSRNOT00000038517:2
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.062 A=NA C2=0.872
Domain overlap (PFAM):
C1:
PF0135222=KRAB=WD(100=95.3)
A:
NA
C2:
PF0135222=KRAB=PD(0.1=0.0)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]