HsaEX0074111 @ hg19
Exon Skipping
Gene
ENSG00000167528 | ZNF641
Description
zinc finger protein 641 [Source:HGNC Symbol;Acc:31834]
Coordinates
chr12:48738382-48741126:-
Coord C1 exon
chr12:48741035-48741126
Coord A exon
chr12:48739128-48739257
Coord C2 exon
chr12:48738382-48738495
Length
130 bp
Sequences
Splice sites
3' ss Seq
GATGCTACATTTTGTTTCAGGGC
3' ss Score
8.12
5' ss Seq
TGAGTAAGC
5' ss Score
5.78
Exon sequences
Seq C1 exon
CTCAGTCTGCTCCCTGGGTTCCTGCAATTCCCCAGGAGGGGAACACTGGAGACTGGGAGATGGCAGCTGCACTTCTTGCGGCTGGATCACAG
Seq A exon
GGCCTGGTAACCATCAAGGATGTGTCACTGTGCTTCTCTCAGGAGGAGTGGCGGAGCCTGGACCCCTCTCAGACAGACTTTTATGGAGAATATGTCATGCAGGAAAACTGTGGGATAGTAGTCTCTCTGA
Seq C2 exon
GATTTCCAATTCCCAAACTGGACATGCTTTCTCAACTAGAAGGAGGAGAAGAACAATGGGTCCCTGACCCCCAGGACTTAGAGGAGAGGGACATTCTGAGGGTCACATATACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000167528_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.560 A=0.023 C2=0.628
Domain overlap (PFAM):
C1:
NO
A:
PF0135222=KRAB=WD(100=95.5)
C2:
PF0135222=KRAB=PD(0.1=0.0)
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTCAGTCTGCTCCCTGGGTTC
R:
ATATGTGACCCTCAGAATGTCCCT
Band lengths:
202-332
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- The Cancer Genome Atlas (TCGA)
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)