MmuEX6056230 @ mm10
Exon Skipping
Gene
ENSMUSG00000022987 | Zfp641
Description
zinc finger protein 641 [Source:MGI Symbol;Acc:MGI:2442788]
Coordinates
chr15:98290478-98292977:-
Coord C1 exon
chr15:98292886-98292977
Coord A exon
chr15:98291171-98291300
Coord C2 exon
chr15:98290478-98290591
Length
130 bp
Sequences
Splice sites
3' ss Seq
AACCGCCTGTCTTGTTTCAGGGC
3' ss Score
11.2
5' ss Seq
TGAGTAAGC
5' ss Score
5.78
Exon sequences
Seq C1 exon
CAACTTCTGTTCCCTGGGTTCCGGCCGTTCCCCAGGAGGGGAACACTGGAGACTGGGAAATGGCAGCCGCACTTCTTGCAGCCGGATCCCAG
Seq A exon
GGCCTAGTAACTATCAAGGATGTGTCCTTGTGCTTCTCTCAGGAGGAGTGGCGGAGCCTGGACCCCTCGCAGACAGACTTTTACGGAGAATATGTCATGCAGGAAAACTGTGGGATCGTCGTCTCTCTGA
Seq C2 exon
GGTTTCCCATCCCCAAATTGGACATGCTTTCTCAACAAGAGGGAGGAGAAGACCAATGGGCCCCTGACCCCCAGGATGTAGAAGGAAGGGACATCCTGAAGGTCACATATACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000022987-'4-10,'4-8,7-10=AN
Average complexity
A_C1
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.884 A=0.189 C2=0.814
Domain overlap (PFAM):
C1:
PF0135222=KRAB=PU(3.1=3.2)
A:
PF0135222=KRAB=WD(100=95.5)
C2:
PF0135222=KRAB=PD(0.1=0.0)
Main Skipping Isoform:
ENSMUST00000023722fB4693
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAACTTCTGTTCCCTGGGTTCC
R:
ATATGTGACCTTCAGGATGTCCC
Band lengths:
202-332
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types